![[Jenkins]](/jenkins/static/f2c3e7bc/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 378 originally caused by: Started by upstream project "Trigger" build number 400 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins11859716578929340078.sh + '[' mrw = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_59827_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 05:14:50,334 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 05:14:50,335 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 05:14:50,335 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:14:50,336 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:14:50,336 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 05:14:50,337 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 05:14:50,337 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 05:14:50,337 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:14:50,337 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:14:50,338 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 05:14:50,338 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 05:14:50,338 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 05:14:50,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 05:14:50,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 05:14:50,580 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 05:14:50,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 05:14:50,589 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 05:14:50,589 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 05:14:50,589 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 05:14:50,589 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 05:14:50,589 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 05:14:50,590 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 05:14:50,590 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 253 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-14 05:14:50,600] [main] java.version = 1.8.0_342 [testng] 05:14:50,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:14:50,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:14:50,647 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-14_05-14-50.log] [testng] 05:14:50,649 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-14 05:14:50,651] [main] testng.directory = /data [testng] [2025-03-14 05:14:50,651] [main] testng.configDirectory = /config [testng] [2025-03-14 05:14:50,663] [main] testng.multiplier = 1.0 [testng] [2025-03-14 05:14:50,663] [main] testng.in-memory = false [testng] [2025-03-14 05:14:50,663] [main] testng.allow-missing = false [testng] [2025-03-14 05:14:50,663] [main] user.language = en [testng] [2025-03-14 05:14:50,663] [main] user.country = ${user.country} [testng] [2025-03-14 05:14:50,663] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-14 05:14:51,273] [main] ---------------------------------------- [testng] [2025-03-14 05:14:51,274] [main] Total files: 19 [testng] [2025-03-14 05:14:51,274] [main] Scan time: 0.61 s (32 ms/file) [testng] [2025-03-14 05:14:51,274] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 19 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-14 05:15:10,071] [pool-1-thread-1] Initializing /data/samples/05-Sep-22_statua_0818.mrw: [testng] 05:15:10,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:15:10,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:15:10,073 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-14_05-15-10.log] [testng] 05:15:10,073 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35d49ad9 - End of configuration. [testng] [2025-03-14 05:15:11,287] [pool-1-thread-12] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw: [testng] 05:15:11,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:15:11,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:15:11,288 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-14_05-15-11.log] [testng] 05:15:11,288 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bd297f9 - End of configuration. [testng] [2025-03-14 05:15:12,536] [pool-1-thread-11] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw: [testng] 05:15:12,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:15:12,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:15:12,537 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-14_05-15-12.log] [testng] 05:15:12,538 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63d07bdc - End of configuration. [testng] [2025-03-14 05:15:13,742] [pool-1-thread-10] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw: [testng] 05:15:13,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:15:13,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:15:13,743 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-14_05-15-13.log] [testng] 05:15:13,743 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f69f782 - End of configuration. [testng] [2025-03-14 05:15:15,019] [pool-1-thread-9] Initializing /data/samples/200R PICT0002.MRW: [testng] 05:15:15,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:15:15,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:15:15,020 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-14_05-15-15.log] [testng] 05:15:15,021 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42a6c909 - End of configuration. [testng] [2025-03-14 05:15:16,178] [pool-1-thread-8] Initializing /data/samples/05-Aug-21_duperele_0353.mrw: [testng] 05:15:16,179 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:15:16,179 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:15:16,179 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-14_05-15-16.log] [testng] 05:15:16,180 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ed9cef5 - End of configuration. [testng] [2025-03-14 05:15:20,088] [pool-1-thread-7] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw: [testng] 05:15:20,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:15:20,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:15:20,089 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-14_05-15-20.log] [testng] 05:15:20,089 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78b4bce3 - End of configuration. [testng] [2025-03-14 05:15:25,175] [pool-1-thread-6] Initializing /data/samples/05-Sep-07_nyc_0531.mrw: [testng] 05:15:25,175 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:15:25,175 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:15:25,176 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-14_05-15-25.log] [testng] 05:15:25,176 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19d05034 - End of configuration. [testng] [2025-03-14 05:15:26,163] [pool-1-thread-5] Initializing /data/samples/05-Sep-03_duperele_0472.mrw: [testng] 05:15:26,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:15:26,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:15:26,164 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-14_05-15-26.log] [testng] 05:15:26,165 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d9d2261 - End of configuration. [testng] [2025-03-14 05:15:27,270] [pool-1-thread-4] Initializing /data/samples/1600R PICT0005.MRW: [testng] 05:15:27,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:15:27,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:15:27,271 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-14_05-15-27.log] [testng] 05:15:27,271 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7206136c - End of configuration. [testng] [2025-03-14 05:15:28,315] [pool-1-thread-3] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw: [testng] 05:15:28,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:15:28,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:15:28,316 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-14_05-15-28.log] [testng] 05:15:28,317 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43c32ecb - End of configuration. [testng] [2025-03-14 05:15:29,389] [pool-1-thread-2] Initializing /data/samples/800R PICT0010.MRW: [testng] 05:15:29,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:15:29,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:15:29,390 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-14_05-15-29.log] [testng] 05:15:29,390 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41a5e011 - End of configuration. [testng] [2025-03-14 05:15:44,584] [pool-1-thread-8] Initializing /data/samples/3200R PICT0006.MRW: [testng] [2025-03-14 05:15:45,488] [pool-1-thread-11] Initializing /data/samples/05-Sep-22_statua_0800.mrw: [testng] [2025-03-14 05:15:46,477] [pool-1-thread-5] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw: [testng] [2025-03-14 05:15:47,659] [pool-1-thread-7] Initializing /data/samples/100R PICT0001.MRW: [testng] [2025-03-14 05:15:48,836] [pool-1-thread-6] Initializing /data/samples/05-Sep-22_statua_0837.mrw: [testng] [2025-03-14 05:15:49,845] [pool-1-thread-3] Initializing /data/samples/05-Sep-14_sigma_0698.mrw: [testng] [2025-03-14 05:15:50,735] [pool-1-thread-2] Initializing /data/samples/400R PICT0003.MRW: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1007, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 15 seconds Finished: SUCCESS