Skip to content

Console Output

Started by upstream project "BIOFORMATS-test-repo" build number 378
originally caused by:
 Started by upstream project "Trigger" build number 400
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins13113101119750039683.sh
+ '[' gif = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_59880_merge_ci -v /uod/idr/repos/curated/gif:/data -v /uod/idr-scratch/merge-ci/curated/gif:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 11:07:11,824 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
   [testng] 11:07:11,826 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service.
   [testng] 11:07:11,826 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 11:07:11,827 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 11:07:11,827 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 11:07:11,827 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 11:07:11,827 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 11:07:11,827 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 11:07:11,828 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 11:07:11,828 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 11:07:11,828 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 11:07:11,828 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 11:07:12,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 11:07:12,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 11:07:12,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 11:07:12,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 11:07:12,080 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 11:07:12,080 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 11:07:12,080 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 11:07:12,081 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 11:07:12,081 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration.
   [testng] 11:07:12,082 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point
   [testng] 11:07:12,082 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 254 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2025-03-14 11:07:12,091] [main] java.version = 1.8.0_342
   [testng] 11:07:12,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 11:07:12,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:07:12,138 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-14_11-07-12.log]
   [testng] 11:07:12,140 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration.
   [testng] [2025-03-14 11:07:12,141] [main] testng.directory = /data
   [testng] [2025-03-14 11:07:12,142] [main] testng.configDirectory = /config
   [testng] [2025-03-14 11:07:12,154] [main] testng.multiplier = 1.0
   [testng] [2025-03-14 11:07:12,154] [main] testng.in-memory = false
   [testng] [2025-03-14 11:07:12,154] [main] testng.allow-missing = false
   [testng] [2025-03-14 11:07:12,154] [main] user.language = en
   [testng] [2025-03-14 11:07:12,154] [main] user.country = ${user.country}
   [testng] [2025-03-14 11:07:12,154] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2025-03-14 11:07:12,706] [main] ----------------------------------------
   [testng] [2025-03-14 11:07:12,706] [main] Total files: 9
   [testng] [2025-03-14 11:07:12,706] [main] Scan time: 0.552 s (61 ms/file)
   [testng] [2025-03-14 11:07:12,706] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 9 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2025-03-14 11:07:16,646] [pool-1-thread-1] Initializing /data/web/Mickey_walks.gif: 
   [testng] 11:07:16,646 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 11:07:16,646 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:07:16,647 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-14_11-07-16.log]
   [testng] 11:07:16,648 |-INFO in ch.qos.logback.core.sift.SiftProcessor@410d859b - End of configuration.
   [testng] [2025-03-14 11:07:17,024] [pool-1-thread-9] Initializing /data/web/dice_1.gif: 
   [testng] 11:07:17,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 11:07:17,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:07:17,025 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-14_11-07-17.log]
   [testng] 11:07:17,026 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1eb874ce - End of configuration.
   [testng] [2025-03-14 11:07:17,362] [pool-1-thread-8] Initializing /data/web/chess.gif: 
   [testng] 11:07:17,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 11:07:17,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:07:17,363 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-14_11-07-17.log]
   [testng] 11:07:17,364 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20ef646e - End of configuration.
   [testng] [2025-03-14 11:07:17,695] [pool-1-thread-7] Initializing /data/brian/23srp5dksub.gif: 
   [testng] 11:07:17,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 11:07:17,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:07:17,696 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-14_11-07-17.log]
   [testng] 11:07:17,697 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f67addd - End of configuration.
   [testng] [2025-03-14 11:07:18,033] [pool-1-thread-6] Initializing /data/brian/raw_a_rg.gif: 
   [testng] 11:07:18,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 11:07:18,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:07:18,034 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-14_11-07-18.log]
   [testng] 11:07:18,034 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ff2078 - End of configuration.
   [testng] [2025-03-14 11:07:18,363] [pool-1-thread-5] Initializing /data/web/Cdrom_spins_2.gif: 
   [testng] 11:07:18,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 11:07:18,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:07:18,364 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-14_11-07-18.log]
   [testng] 11:07:18,365 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f84e4a9 - End of configuration.
   [testng] [2025-03-14 11:07:18,758] [pool-1-thread-4] Initializing /data/brian/DMSOHigh_001.gif: 
   [testng] 11:07:18,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 11:07:18,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:07:18,759 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-14_11-07-18.log]
   [testng] 11:07:18,759 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e27396c - End of configuration.
   [testng] [2025-03-14 11:07:19,173] [pool-1-thread-3] Initializing /data/simon/animated.gif: 
   [testng] 11:07:19,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 11:07:19,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:07:19,174 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-14_11-07-19.log]
   [testng] 11:07:19,175 |-INFO in ch.qos.logback.core.sift.SiftProcessor@331fe4f4 - End of configuration.
   [testng] [2025-03-14 11:07:19,793] [pool-1-thread-2] Initializing /data/web/Mouse-mouse.gif: 
   [testng] 11:07:19,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 11:07:19,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:07:19,794 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-14_11-07-19.log]
   [testng] 11:07:19,795 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f323388 - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 477, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 17 seconds
Finished: SUCCESS