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Started by upstream project "BIOFORMATS-test-repo" build number 378 originally caused by: Started by upstream project "Trigger" build number 400 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins10868361951616683822.sh + '[' cellr = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_59882_merge_ci -v /uod/idr/repos/curated/cellr:/data -v /uod/idr-scratch/merge-ci/curated/cellr:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 11:08:04,100 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 11:08:04,102 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 11:08:04,102 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:08:04,103 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:08:04,103 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 11:08:04,103 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 11:08:04,103 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 11:08:04,103 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:08:04,104 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:08:04,104 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 11:08:04,104 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 11:08:04,104 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 11:08:04,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 11:08:04,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 11:08:04,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 11:08:04,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 11:08:04,355 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 11:08:04,355 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 11:08:04,355 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 11:08:04,355 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 11:08:04,356 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 11:08:04,356 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 11:08:04,356 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 252 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-14 11:08:04,366] [main] java.version = 1.8.0_342 [testng] 11:08:04,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 11:08:04,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:08:04,413 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-14_11-08-04.log] [testng] 11:08:04,414 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-14 11:08:04,416] [main] testng.directory = /data [testng] [2025-03-14 11:08:04,416] [main] testng.configDirectory = /config [testng] [2025-03-14 11:08:04,428] [main] testng.multiplier = 1.0 [testng] [2025-03-14 11:08:04,428] [main] testng.in-memory = false [testng] [2025-03-14 11:08:04,429] [main] testng.allow-missing = false [testng] [2025-03-14 11:08:04,429] [main] user.language = en [testng] [2025-03-14 11:08:04,429] [main] user.country = ${user.country} [testng] [2025-03-14 11:08:04,429] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-14 11:11:18,209] [main] ---------------------------------------- [testng] [2025-03-14 11:11:18,209] [main] Total files: 256 [testng] [2025-03-14 11:11:18,210] [main] Scan time: 193.78 s (756 ms/file) [testng] [2025-03-14 11:11:18,210] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 13 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-14 11:23:08,333] [pool-1-thread-1] Initializing /data/viktorie/090902/090902_d.mtb: [testng] 11:23:08,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 11:23:08,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:23:08,335 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-14_11-23-08.log] [testng] 11:23:08,335 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18c386c2 - End of configuration. [testng] [2025-03-14 11:23:11,767] [pool-1-thread-12] Initializing /data/viktorie/2Channels.tif: [testng] 11:23:11,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 11:23:11,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:23:11,768 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-14_11-23-11.log] [testng] 11:23:11,769 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a9c8665 - End of configuration. [testng] [2025-03-14 11:23:14,463] [pool-1-thread-11] Initializing /data/colin/08-10-09/08-10-09_d.mtb: [testng] 11:23:14,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 11:23:14,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:23:14,464 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-14_11-23-14.log] [testng] 11:23:14,464 |-INFO in ch.qos.logback.core.sift.SiftProcessor@735e9da3 - End of configuration. [testng] [2025-03-14 11:23:19,762] [pool-1-thread-10] Initializing /data/viktorie/Structure.jpg: [testng] 11:23:19,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 11:23:19,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:23:19,763 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-14_11-23-19.log] [testng] 11:23:19,763 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41f92ef8 - End of configuration. [testng] [2025-03-14 11:23:20,581] [pool-1-thread-9] Initializing /data/qa-6659/12-07-05/12-07-05_d.mtb: [testng] 11:23:20,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 11:23:20,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:23:20,582 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-14_11-23-20.log] [testng] 11:23:20,582 |-INFO in ch.qos.logback.core.sift.SiftProcessor@555e4d53 - End of configuration. [testng] [2025-03-14 11:23:26,160] [pool-1-thread-8] Initializing /data/clare/set_27_on_d.mtb: [testng] 11:23:26,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 11:23:26,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:23:26,162 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-14_11-23-26.log] [testng] 11:23:26,162 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60df2522 - End of configuration. [testng] [2025-03-14 11:23:30,273] [pool-1-thread-7] Initializing /data/qa-17107/plain/Plain_d.mtb: [testng] 11:23:30,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 11:23:30,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:23:30,274 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-14_11-23-30.log] [testng] 11:23:30,274 |-INFO in ch.qos.logback.core.sift.SiftProcessor@770ce705 - End of configuration. [testng] [2025-03-14 11:23:34,248] [pool-1-thread-6] Initializing /data/qa-17107/LifeScienceDemo/LifeScienceDemoSTAR_d.mtb: [testng] 11:23:34,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 11:23:34,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:23:34,248 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-14_11-23-34.log] [testng] 11:23:34,249 |-INFO in ch.qos.logback.core.sift.SiftProcessor@faa7fe3 - End of configuration. [testng] [2025-03-14 11:23:39,655] [pool-1-thread-5] Initializing /data/qa-17107/example2/example2_d.mtb: [testng] 11:23:39,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 11:23:39,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:23:39,656 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-14_11-23-39.log] [testng] 11:23:39,656 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d794d09 - End of configuration. [testng] [2025-03-14 11:23:44,496] [pool-1-thread-4] Initializing /data/qa-17107/MaterialsDemo/MaterialsDemo_d.mtb: [testng] 11:23:44,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 11:23:44,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:23:44,497 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-14_11-23-44.log] [testng] 11:23:44,498 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60c123a5 - End of configuration. [testng] [2025-03-14 11:23:48,612] [pool-1-thread-3] Initializing /data/kees/Mariaelena_d.mtb: [testng] 11:23:48,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 11:23:48,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:23:48,613 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-14_11-23-48.log] [testng] 11:23:48,634 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2984a9c6 - End of configuration. [testng] [2025-03-14 11:23:53,083] [pool-1-thread-2] Initializing /data/colin/07-06-21/07-06-21_d.mtb: [testng] 11:23:53,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 11:23:53,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:23:53,084 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-14_11-23-53.log] [testng] 11:23:53,085 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3459fb7b - End of configuration. [testng] [2025-03-14 11:24:04,390] [pool-1-thread-10] Initializing /data/viktorie/test/test_d.mtb: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 689, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 20 minutes 34 seconds Finished: SUCCESS