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Started by upstream project "BIOFORMATS-test-repo" build number 379 originally caused by: Started by upstream project "Trigger" build number 401 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins1543292768164026418.sh + '[' mrw = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_59992_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 05:26:09,497 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 05:26:09,499 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service. [testng] 05:26:09,499 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:26:09,499 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:26:09,500 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 05:26:09,500 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 05:26:09,501 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 05:26:09,501 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:26:09,501 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:26:09,502 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 05:26:09,502 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 05:26:09,502 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 05:26:09,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 05:26:09,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 05:26:09,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 05:26:09,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 05:26:09,696 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 05:26:09,697 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 05:26:09,697 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 05:26:09,698 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 05:26:09,698 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration. [testng] 05:26:09,698 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point [testng] 05:26:09,698 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 197 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-15 05:26:09,707] [main] java.version = 11.0.16 [testng] 05:26:09,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:26:09,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:26:09,751 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-15_05-26-09.log] [testng] 05:26:09,753 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration. [testng] [2025-03-15 05:26:09,755] [main] testng.directory = /data [testng] [2025-03-15 05:26:09,755] [main] testng.configDirectory = /config [testng] [2025-03-15 05:26:09,765] [main] testng.multiplier = 1.0 [testng] [2025-03-15 05:26:09,766] [main] testng.in-memory = false [testng] [2025-03-15 05:26:09,766] [main] testng.allow-missing = false [testng] [2025-03-15 05:26:09,766] [main] user.language = en [testng] [2025-03-15 05:26:09,766] [main] user.country = ${user.country} [testng] [2025-03-15 05:26:09,766] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-15 05:26:10,464] [main] ---------------------------------------- [testng] [2025-03-15 05:26:10,464] [main] Total files: 19 [testng] [2025-03-15 05:26:10,464] [main] Scan time: 0.698 s (36 ms/file) [testng] [2025-03-15 05:26:10,464] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 19 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-15 05:26:31,781] [pool-1-thread-1] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw: [testng] 05:26:31,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:26:31,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:26:31,784 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-15_05-26-31.log] [testng] 05:26:31,784 |-INFO in ch.qos.logback.core.sift.SiftProcessor@799fd8c7 - End of configuration. [testng] [2025-03-15 05:26:32,783] [pool-1-thread-12] Initializing /data/samples/200R PICT0002.MRW: [testng] 05:26:32,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:26:32,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:26:32,792 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-15_05-26-32.log] [testng] 05:26:32,792 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c47a364 - End of configuration. [testng] [2025-03-15 05:26:33,993] [pool-1-thread-11] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw: [testng] 05:26:33,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:26:33,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:26:33,994 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-15_05-26-33.log] [testng] 05:26:33,995 |-INFO in ch.qos.logback.core.sift.SiftProcessor@540fa47c - End of configuration. [testng] [2025-03-15 05:26:35,156] [pool-1-thread-10] Initializing /data/samples/100R PICT0001.MRW: [testng] 05:26:35,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:26:35,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:26:35,157 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-15_05-26-35.log] [testng] 05:26:35,158 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74db2791 - End of configuration. [testng] [2025-03-15 05:26:36,451] [pool-1-thread-9] Initializing /data/samples/05-Sep-07_nyc_0531.mrw: [testng] 05:26:36,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:26:36,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:26:36,452 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-15_05-26-36.log] [testng] 05:26:36,452 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58da4d70 - End of configuration. [testng] [2025-03-15 05:26:37,673] [pool-1-thread-8] Initializing /data/samples/05-Sep-03_duperele_0472.mrw: [testng] 05:26:37,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:26:37,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:26:37,674 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-15_05-26-37.log] [testng] 05:26:37,674 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6831edeb - End of configuration. [testng] [2025-03-15 05:26:38,991] [pool-1-thread-7] Initializing /data/samples/05-Sep-14_sigma_0698.mrw: [testng] 05:26:38,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:26:38,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:26:38,992 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-15_05-26-38.log] [testng] 05:26:38,993 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6aa5e6a8 - End of configuration. [testng] [2025-03-15 05:26:40,438] [pool-1-thread-6] Initializing /data/samples/400R PICT0003.MRW: [testng] 05:26:40,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:26:40,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:26:40,444 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-15_05-26-40.log] [testng] 05:26:40,444 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e20cdd - End of configuration. [testng] [2025-03-15 05:26:41,906] [pool-1-thread-5] Initializing /data/samples/3200R PICT0006.MRW: [testng] 05:26:41,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:26:41,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:26:41,907 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-15_05-26-41.log] [testng] 05:26:41,907 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67824092 - End of configuration. [testng] [2025-03-15 05:26:43,370] [pool-1-thread-4] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw: [testng] 05:26:43,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:26:43,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:26:43,371 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-15_05-26-43.log] [testng] 05:26:43,372 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ea901f - End of configuration. [testng] [2025-03-15 05:26:44,772] [pool-1-thread-3] Initializing /data/samples/05-Sep-22_statua_0837.mrw: [testng] 05:26:44,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:26:44,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:26:44,773 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-15_05-26-44.log] [testng] 05:26:44,773 |-INFO in ch.qos.logback.core.sift.SiftProcessor@665afd2 - End of configuration. [testng] [2025-03-15 05:26:46,144] [pool-1-thread-2] Initializing /data/samples/1600R PICT0005.MRW: [testng] 05:26:46,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:26:46,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:26:46,145 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-15_05-26-46.log] [testng] 05:26:46,146 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f9b40ef - End of configuration. [testng] [2025-03-15 05:27:02,192] [pool-1-thread-9] Initializing /data/samples/800R PICT0010.MRW: [testng] [2025-03-15 05:27:04,800] [pool-1-thread-6] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw: [testng] [2025-03-15 05:27:08,042] [pool-1-thread-10] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw: [testng] [2025-03-15 05:27:09,854] [pool-1-thread-8] Initializing /data/samples/05-Sep-22_statua_0818.mrw: [testng] [2025-03-15 05:27:10,904] [pool-1-thread-2] Initializing /data/samples/05-Sep-22_statua_0800.mrw: [testng] [2025-03-15 05:27:11,692] [pool-1-thread-4] Initializing /data/samples/05-Aug-21_duperele_0353.mrw: [testng] [2025-03-15 05:27:12,743] [pool-1-thread-5] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1007, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 18 seconds Finished: SUCCESS