![[Jenkins]](/jenkins/static/aacddba8/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 379 originally caused by: Started by upstream project "Trigger" build number 401 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins11981989914127093389.sh + '[' psd = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_60030_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 08:35:24,846 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 08:35:24,847 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service. [testng] 08:35:24,847 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:35:24,848 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:35:24,849 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 08:35:24,849 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 08:35:24,850 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 08:35:24,850 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:35:24,850 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:35:24,851 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 08:35:24,851 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 08:35:24,851 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 08:35:25,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:35:25,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:35:25,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:35:25,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:35:25,040 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:35:25,040 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:35:25,040 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:35:25,040 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:35:25,040 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration. [testng] 08:35:25,041 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point [testng] 08:35:25,041 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 191 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-15 08:35:25,050] [main] java.version = 11.0.16 [testng] 08:35:25,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:35:25,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:35:25,094 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-15_08-35-25.log] [testng] 08:35:25,095 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration. [testng] [2025-03-15 08:35:25,097] [main] testng.directory = /data [testng] [2025-03-15 08:35:25,098] [main] testng.configDirectory = /config [testng] [2025-03-15 08:35:25,107] [main] testng.multiplier = 1.0 [testng] [2025-03-15 08:35:25,108] [main] testng.in-memory = false [testng] [2025-03-15 08:35:25,109] [main] testng.allow-missing = false [testng] [2025-03-15 08:35:25,109] [main] user.language = en [testng] [2025-03-15 08:35:25,109] [main] user.country = ${user.country} [testng] [2025-03-15 08:35:25,109] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-15 08:35:26,449] [main] ---------------------------------------- [testng] [2025-03-15 08:35:26,450] [main] Total files: 18 [testng] [2025-03-15 08:35:26,450] [main] Scan time: 1.34 s (74 ms/file) [testng] [2025-03-15 08:35:26,450] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-15 08:35:54,525] [pool-1-thread-1] Initializing /data/misc/venus_composite.psd: [testng] 08:35:54,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:35:54,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:35:54,528 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-15_08-35-54.log] [testng] 08:35:54,529 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55f15423 - End of configuration. [testng] [2025-03-15 08:35:55,597] [pool-1-thread-12] Initializing /data/misc/smilie.psd: [testng] 08:35:55,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:35:55,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:35:55,599 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-15_08-35-55.log] [testng] 08:35:55,600 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a409a69 - End of configuration. [testng] [2025-03-15 08:35:56,687] [pool-1-thread-11] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] 08:35:56,687 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:35:56,688 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:35:56,688 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-15_08-35-56.log] [testng] 08:35:56,689 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ff9a748 - End of configuration. [testng] [2025-03-15 08:35:57,704] [pool-1-thread-10] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] 08:35:57,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:35:57,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:35:57,705 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-15_08-35-57.log] [testng] 08:35:57,705 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f564c66 - End of configuration. [testng] [2025-03-15 08:35:58,973] [pool-1-thread-9] Initializing /data/ascb/thin&thick fill.2.psd: [testng] 08:35:58,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:35:58,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:35:58,974 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-15_08-35-58.log] [testng] 08:35:58,974 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27442a3b - End of configuration. [testng] [2025-03-15 08:36:00,131] [pool-1-thread-8] Initializing /data/misc/vig_drawing_1.psd: [testng] 08:36:00,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:36:00,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:36:00,132 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-15_08-36-00.log] [testng] 08:36:00,132 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fef34cf - End of configuration. [testng] [2025-03-15 08:36:01,389] [pool-1-thread-7] Initializing /data/misc/venus_composite_8bit.psd: [testng] 08:36:01,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:36:01,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:36:01,390 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-15_08-36-01.log] [testng] 08:36:01,391 |-INFO in ch.qos.logback.core.sift.SiftProcessor@678253fa - End of configuration. [testng] [2025-03-15 08:36:02,542] [pool-1-thread-6] Initializing /data/cris/house.tif: [testng] 08:36:02,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:36:02,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:36:02,543 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-15_08-36-02.log] [testng] 08:36:02,544 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61a0d5fb - End of configuration. [testng] [2025-03-15 08:36:06,568] [pool-1-thread-5] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] 08:36:06,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:36:06,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:36:06,569 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-15_08-36-06.log] [testng] 08:36:06,570 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ef341cc - End of configuration. [testng] [2025-03-15 08:36:07,788] [pool-1-thread-4] Initializing /data/ascb/607x.psd: [testng] 08:36:07,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:36:07,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:36:07,789 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-15_08-36-07.log] [testng] 08:36:07,790 |-INFO in ch.qos.logback.core.sift.SiftProcessor@230ddb93 - End of configuration. [testng] [2025-03-15 08:36:08,738] [pool-1-thread-3] Initializing /data/ascb/423.psd: [testng] 08:36:08,739 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:36:08,739 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:36:08,739 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-15_08-36-08.log] [testng] 08:36:08,740 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5726210a - End of configuration. [testng] [2025-03-15 08:36:10,619] [pool-1-thread-2] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] 08:36:10,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:36:10,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:36:10,620 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-15_08-36-10.log] [testng] 08:36:10,620 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37964476 - End of configuration. [testng] [2025-03-15 08:36:23,328] [pool-1-thread-12] Initializing /data/big-images/8kx8k.psd: [testng] [2025-03-15 08:36:24,176] [pool-1-thread-5] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] [2025-03-15 08:36:25,524] [pool-1-thread-8] Initializing /data/simon/colour_separated_image.psd: [testng] [2025-03-15 08:36:26,777] [pool-1-thread-1] Initializing /data/misc/glossy_orbs.psd: [testng] [2025-03-15 08:36:27,587] [pool-1-thread-9] Initializing /data/misc/glossy_buttons.psd: [testng] [2025-03-15 08:36:28,335] [pool-1-thread-11] Initializing /data/qa-4117/caspase gel-1.psd: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 30 seconds Finished: SUCCESS