![[Jenkins]](/jenkins/static/f8f0d1dd/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 379 originally caused by: Started by upstream project "Trigger" build number 401 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins9344529854254157999.sh + '[' imagepro = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_60055_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 11:25:21,930 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 11:25:21,932 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service. [testng] 11:25:21,932 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:25:21,933 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:25:21,933 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 11:25:21,934 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 11:25:21,934 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 11:25:21,934 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:25:21,935 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:25:21,935 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 11:25:21,936 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 11:25:21,936 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 11:25:22,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 11:25:22,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 11:25:22,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 11:25:22,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 11:25:22,131 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 11:25:22,131 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 11:25:22,131 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 11:25:22,131 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 11:25:22,131 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration. [testng] 11:25:22,132 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point [testng] 11:25:22,133 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 198 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-15 11:25:22,141] [main] java.version = 11.0.16 [testng] 11:25:22,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 11:25:22,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:25:22,186 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-15_11-25-22.log] [testng] 11:25:22,187 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration. [testng] [2025-03-15 11:25:22,190] [main] testng.directory = /data [testng] [2025-03-15 11:25:22,190] [main] testng.configDirectory = /config [testng] [2025-03-15 11:25:22,200] [main] testng.multiplier = 1.0 [testng] [2025-03-15 11:25:22,201] [main] testng.in-memory = false [testng] [2025-03-15 11:25:22,201] [main] testng.allow-missing = false [testng] [2025-03-15 11:25:22,201] [main] user.language = en [testng] [2025-03-15 11:25:22,201] [main] user.country = ${user.country} [testng] [2025-03-15 11:25:22,201] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-15 11:25:29,592] [main] ---------------------------------------- [testng] [2025-03-15 11:25:29,592] [main] Total files: 22 [testng] [2025-03-15 11:25:29,592] [main] Scan time: 7.391 s (335 ms/file) [testng] [2025-03-15 11:25:29,592] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-15 11:26:00,609] [pool-1-thread-1] Initializing /data/samples/TISSUE.TIF: [testng] 11:26:00,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 11:26:00,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:26:00,611 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-15_11-26-00.log] [testng] 11:26:00,612 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58696402 - End of configuration. [testng] [2025-03-15 11:26:02,734] [pool-1-thread-12] Initializing /data/converted/dub01.ipw: [testng] 11:26:02,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 11:26:02,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:26:02,735 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-15_11-26-02.log] [testng] 11:26:02,735 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73db2575 - End of configuration. [testng] [2025-03-15 11:26:03,566] [pool-1-thread-11] Initializing /data/converted/clown.seq: [testng] 11:26:03,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 11:26:03,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:26:03,567 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-15_11-26-03.log] [testng] 11:26:03,567 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d70a299 - End of configuration. [testng] [2025-03-15 11:26:04,462] [pool-1-thread-10] Initializing /data/samples/HEART.SEQ: [testng] 11:26:04,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 11:26:04,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:26:04,463 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-15_11-26-04.log] [testng] 11:26:04,463 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d69422a - End of configuration. [testng] [2025-03-15 11:26:05,303] [pool-1-thread-9] Initializing /data/converted/dub01.seq: [testng] 11:26:05,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 11:26:05,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:26:05,303 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-15_11-26-05.log] [testng] 11:26:05,304 |-INFO in ch.qos.logback.core.sift.SiftProcessor@580a583b - End of configuration. [testng] [2025-03-15 11:26:06,241] [pool-1-thread-8] Initializing /data/xiuwen/head2.seq: [testng] 11:26:06,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 11:26:06,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:26:06,242 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-15_11-26-06.log] [testng] 11:26:06,242 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b58e326 - End of configuration. [testng] [2025-03-15 11:26:07,255] [pool-1-thread-7] Initializing /data/converted/clown8c.seq: [testng] 11:26:07,255 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 11:26:07,255 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:26:07,256 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-15_11-26-07.log] [testng] 11:26:07,256 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69954fb5 - End of configuration. [testng] [2025-03-15 11:26:08,920] [pool-1-thread-6] Initializing /data/converted/mitosis-test.seq: [testng] 11:26:08,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 11:26:08,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:26:08,921 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-15_11-26-08.log] [testng] 11:26:08,921 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c05f47a - End of configuration. [testng] [2025-03-15 11:26:09,856] [pool-1-thread-5] Initializing /data/converted/clown8c.tif: [testng] 11:26:09,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 11:26:09,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:26:09,857 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-15_11-26-09.log] [testng] 11:26:09,857 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2eccac63 - End of configuration. [testng] [2025-03-15 11:26:12,273] [pool-1-thread-4] Initializing /data/converted/clown.ipw: [testng] 11:26:12,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 11:26:12,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:26:12,274 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-15_11-26-12.log] [testng] 11:26:12,274 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c0015ab - End of configuration. [testng] [2025-03-15 11:26:13,183] [pool-1-thread-3] Initializing /data/alex/AFAset0003.ips: [testng] 11:26:13,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 11:26:13,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:26:13,184 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-15_11-26-13.log] [testng] 11:26:13,184 |-INFO in ch.qos.logback.core.sift.SiftProcessor@185dbddc - End of configuration. [testng] [2025-03-15 11:26:14,167] [pool-1-thread-2] Initializing /data/converted/NESb_C2_TP7.tiff: [testng] 11:26:14,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 11:26:14,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:26:14,168 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-15_11-26-14.log] [testng] 11:26:14,168 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c3b43c4 - End of configuration. [testng] [2025-03-15 11:26:25,940] [pool-1-thread-12] Initializing /data/converted/mitosis-test.ipw: [testng] [2025-03-15 11:26:26,800] [pool-1-thread-4] Initializing /data/samples/FLDUAL.TIF: [testng] [2025-03-15 11:26:29,056] [pool-1-thread-7] Initializing /data/converted/clown8c.ipw: [testng] [2025-03-15 11:26:29,918] [pool-1-thread-11] Initializing /data/converted/dub01.pic: [testng] [2025-03-15 11:26:30,778] [pool-1-thread-10] Initializing /data/converted/clown.tif: [testng] [2025-03-15 11:26:31,704] [pool-1-thread-9] Initializing /data/samples/PROBE.TIF: [testng] [2025-03-15 11:26:32,697] [pool-1-thread-6] Initializing /data/converted/NESb_C2_TP7.ipw: [testng] [2025-03-15 11:26:34,455] [pool-1-thread-8] Initializing /data/converted/NESb_C2_TP7.seq: [testng] [2025-03-15 11:26:39,499] [pool-1-thread-5] Initializing /data/converted/mitosis-test.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 6 minutes 2 seconds Finished: SUCCESS