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Started by upstream project "BIOFORMATS-test-repo" build number 380 originally caused by: Started by upstream project "Trigger" build number 402 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins2558882246620366040.sh + '[' fei = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_60090_merge_ci -v /uod/idr/repos/curated/fei:/data -v /uod/idr-scratch/merge-ci/curated/fei:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:47:13,515 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:47:13,517 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 00:47:13,517 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:47:13,518 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:47:13,518 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:47:13,518 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:47:13,519 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:47:13,519 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:47:13,519 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:47:13,520 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:47:13,520 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:47:13,520 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:47:13,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:47:13,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:47:13,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:47:13,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:47:13,706 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:47:13,706 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:47:13,706 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:47:13,707 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:47:13,707 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 00:47:13,708 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 00:47:13,708 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 189 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-16 00:47:13,717] [main] java.version = 17.0.2 [testng] 00:47:13,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:47:13,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:13,760 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-16_00-47-13.log] [testng] 00:47:13,761 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-03-16 00:47:13,763] [main] testng.directory = /data [testng] [2025-03-16 00:47:13,763] [main] testng.configDirectory = /config [testng] [2025-03-16 00:47:13,772] [main] testng.multiplier = 1.0 [testng] [2025-03-16 00:47:13,773] [main] testng.in-memory = false [testng] [2025-03-16 00:47:13,773] [main] testng.allow-missing = false [testng] [2025-03-16 00:47:13,773] [main] user.language = en [testng] [2025-03-16 00:47:13,773] [main] user.country = ${user.country} [testng] [2025-03-16 00:47:13,773] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-16 00:47:40,196] [main] ---------------------------------------- [testng] [2025-03-16 00:47:40,196] [main] Total files: 21 [testng] [2025-03-16 00:47:40,196] [main] Scan time: 26.423 s (1258 ms/file) [testng] [2025-03-16 00:47:40,197] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-16 00:49:40,365] [pool-1-thread-1] Initializing /data/qa-4264/08.51.17 CCD Acquire-Acquire CCD Image Display-Acquire CCD -0.tif: [testng] 00:49:40,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:49:40,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:40,366 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-16_00-49-40.log] [testng] 00:49:40,367 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6eeca881 - End of configuration. [testng] [2025-03-16 00:49:43,741] [pool-1-thread-12] Initializing /data/venu/VENU02.TIF: [testng] 00:49:43,741 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:49:43,741 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:43,742 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-16_00-49-43.log] [testng] 00:49:43,742 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72f624dd - End of configuration. [testng] [2025-03-16 00:49:47,365] [pool-1-thread-11] Initializing /data/venu/VENU.TIF: [testng] 00:49:47,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:49:47,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:47,366 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-16_00-49-47.log] [testng] 00:49:47,367 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ee44787 - End of configuration. [testng] [2025-03-16 00:49:51,182] [pool-1-thread-10] Initializing /data/venu/VENU01.TIF: [testng] 00:49:51,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:49:51,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:51,183 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-16_00-49-51.log] [testng] 00:49:51,183 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c3bc2f0 - End of configuration. [testng] [2025-03-16 00:49:54,771] [pool-1-thread-9] Initializing /data/qa-11061/Tile_020-009-000_0.tif: [testng] 00:49:54,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:49:54,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:54,772 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-16_00-49-54.log] [testng] 00:49:54,773 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4832e50c - End of configuration. [testng] [2025-03-16 00:49:59,264] [pool-1-thread-8] Initializing /data/venu/VENU_Five.TIF: [testng] 00:49:59,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:49:59,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:59,265 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-16_00-49-59.log] [testng] 00:49:59,266 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d54f863 - End of configuration. [testng] [2025-03-16 00:50:03,219] [pool-1-thread-7] Initializing /data/venu/VENU01.IMG: [testng] 00:50:03,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:50:03,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:03,220 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-16_00-50-03.log] [testng] 00:50:03,221 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d72b258 - End of configuration. [testng] [2025-03-16 00:50:04,593] [pool-1-thread-6] Initializing /data/qa-10514/TITAN_FEI_TIFF_Test_Image.tif: [testng] 00:50:04,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:50:04,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:04,594 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-16_00-50-04.log] [testng] 00:50:04,594 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36c5006a - End of configuration. [testng] [2025-03-16 00:50:08,259] [pool-1-thread-5] Initializing /data/venu/VENU02.IMG: [testng] 00:50:08,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:50:08,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:08,260 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-16_00-50-08.log] [testng] 00:50:08,260 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f3127b7 - End of configuration. [testng] [2025-03-16 00:50:09,443] [pool-1-thread-4] Initializing /data/venu/VENU_Eight.TIF: [testng] 00:50:09,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:50:09,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:09,444 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-16_00-50-09.log] [testng] 00:50:09,444 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b7cbbe7 - End of configuration. [testng] [2025-03-16 00:50:13,924] [pool-1-thread-3] Initializing /data/steffen/Batman_008.tif: [testng] 00:50:13,924 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:50:13,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:13,926 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-16_00-50-13.log] [testng] 00:50:13,926 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32569c3a - End of configuration. [testng] [2025-03-16 00:50:20,277] [pool-1-thread-2] Initializing /data/venu/VENU_Four.TIF: [testng] 00:50:20,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:50:20,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:20,278 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-16_00-50-20.log] [testng] 00:50:20,278 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71b5d6bf - End of configuration. [testng] [2025-03-16 00:50:37,903] [pool-1-thread-5] Initializing /data/venu/VENU_Seven.TIF: [testng] [2025-03-16 00:50:40,889] [pool-1-thread-7] Initializing /data/antoine/Tile_001-002-000_0-000.tif: [testng] [2025-03-16 00:50:58,607] [pool-1-thread-6] Initializing /data/venu/VENU03.IMG: [testng] [2025-03-16 00:51:00,314] [pool-1-thread-8] Initializing /data/venu/VENU_Six.TIF: [testng] [2025-03-16 00:51:04,501] [pool-1-thread-4] Initializing /data/peter/ZC_PTCS_ED_1000x_002.tif: [testng] [2025-03-16 00:51:08,001] [pool-1-thread-11] Initializing /data/venu/VENU03.TIF: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 23 seconds Finished: SUCCESS