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Started by upstream project "BIOFORMATS-test-repo" build number 380 originally caused by: Started by upstream project "Trigger" build number 402 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins3170715865491464186.sh + '[' pict = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_60113_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:28:06,459 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 01:28:06,460 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 01:28:06,460 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:28:06,461 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:28:06,461 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:28:06,462 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:28:06,462 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:28:06,462 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:28:06,463 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:28:06,463 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:28:06,463 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:28:06,464 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:28:06,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:28:06,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:28:06,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:28:06,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:28:06,654 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:28:06,654 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:28:06,654 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:28:06,655 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:28:06,655 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 01:28:06,656 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 01:28:06,656 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 193 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-16 01:28:06,665] [main] java.version = 17.0.2 [testng] 01:28:06,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:28:06,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:06,709 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-16_01-28-06.log] [testng] 01:28:06,710 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-03-16 01:28:06,712] [main] testng.directory = /data [testng] [2025-03-16 01:28:06,713] [main] testng.configDirectory = /config [testng] [2025-03-16 01:28:06,722] [main] testng.multiplier = 1.0 [testng] [2025-03-16 01:28:06,722] [main] testng.in-memory = false [testng] [2025-03-16 01:28:06,722] [main] testng.allow-missing = false [testng] [2025-03-16 01:28:06,722] [main] user.language = en [testng] [2025-03-16 01:28:06,723] [main] user.country = ${user.country} [testng] [2025-03-16 01:28:06,723] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-16 01:28:07,569] [main] ---------------------------------------- [testng] [2025-03-16 01:28:07,569] [main] Total files: 25 [testng] [2025-03-16 01:28:07,569] [main] Scan time: 0.846 s (33 ms/file) [testng] [2025-03-16 01:28:07,570] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-16 01:28:36,305] [pool-1-thread-1] Initializing /data/misc/swlogo.pict: [testng] 01:28:36,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:28:36,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:36,306 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-16_01-28-36.log] [testng] 01:28:36,307 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b010c18 - End of configuration. [testng] [2025-03-16 01:28:38,339] [pool-1-thread-12] Initializing /data/jqd/sixteenBit.pict: [testng] 01:28:38,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:28:38,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:38,341 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-16_01-28-38.log] [testng] 01:28:38,341 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6323a76a - End of configuration. [testng] [2025-03-16 01:28:39,795] [pool-1-thread-11] Initializing /data/brian/images/YEL.PCT: [testng] 01:28:39,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:28:39,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:39,796 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-16_01-28-39.log] [testng] 01:28:39,797 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c320cb1 - End of configuration. [testng] [2025-03-16 01:28:41,574] [pool-1-thread-10] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] 01:28:41,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:28:41,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:41,575 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-16_01-28-41.log] [testng] 01:28:41,576 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3220fad3 - End of configuration. [testng] [2025-03-16 01:28:43,686] [pool-1-thread-9] Initializing /data/misc/planet.pict: [testng] 01:28:43,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:28:43,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:43,687 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-16_01-28-43.log] [testng] 01:28:43,687 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46a12fd9 - End of configuration. [testng] [2025-03-16 01:28:46,050] [pool-1-thread-8] Initializing /data/jqd/mire32.pict: [testng] 01:28:46,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:28:46,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:46,051 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-16_01-28-46.log] [testng] 01:28:46,052 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b002e0d - End of configuration. [testng] [2025-03-16 01:28:48,792] [pool-1-thread-7] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] 01:28:48,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:28:48,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:48,793 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-16_01-28-48.log] [testng] 01:28:48,794 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53857774 - End of configuration. [testng] [2025-03-16 01:28:51,246] [pool-1-thread-6] Initializing /data/brian/images/FLAG_B32.pct: [testng] 01:28:51,247 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:28:51,247 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:51,248 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-16_01-28-51.log] [testng] 01:28:51,249 |-INFO in ch.qos.logback.core.sift.SiftProcessor@196433ac - End of configuration. [testng] [2025-03-16 01:28:53,951] [pool-1-thread-5] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] 01:28:53,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:28:53,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:53,951 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-16_01-28-53.log] [testng] 01:28:53,952 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11bee2d3 - End of configuration. [testng] [2025-03-16 01:28:57,463] [pool-1-thread-4] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] 01:28:57,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:28:57,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:57,464 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-16_01-28-57.log] [testng] 01:28:57,464 |-INFO in ch.qos.logback.core.sift.SiftProcessor@573e7e7b - End of configuration. [testng] [2025-03-16 01:29:01,124] [pool-1-thread-3] Initializing /data/brian/images/FLAG_B24.PCT: [testng] 01:29:01,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:29:01,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:01,125 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-16_01-29-01.log] [testng] 01:29:01,125 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d957e1e - End of configuration. [testng] [2025-03-16 01:29:04,294] [pool-1-thread-2] Initializing /data/misc/planet.png: [testng] 01:29:04,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:29:04,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:04,295 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-16_01-29-04.log] [testng] 01:29:04,295 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43d6a3b1 - End of configuration. [testng] [2025-03-16 01:29:15,641] [pool-1-thread-2] Initializing /data/jqd/mireSixteen.pict: [testng] [2025-03-16 01:29:32,152] [pool-1-thread-8] Initializing /data/brian/images/RED.PCT: [testng] [2025-03-16 01:29:35,065] [pool-1-thread-11] Initializing /data/brian/images/BLK.PCT: [testng] [2025-03-16 01:29:37,391] [pool-1-thread-9] Initializing /data/brian/images/GRN.PCT: [testng] [2025-03-16 01:29:40,307] [pool-1-thread-3] Initializing /data/misc/planet2.pict: [testng] [2025-03-16 01:29:43,317] [pool-1-thread-5] Initializing /data/brian/images/TRU256.PCT: [testng] [2025-03-16 01:29:45,875] [pool-1-thread-1] Initializing /data/wayne/PotatoMeristem.pict: [testng] [2025-03-16 01:29:49,540] [pool-1-thread-6] Initializing /data/brian/images/FLAG_RGB.pct: [testng] [2025-03-16 01:29:52,783] [pool-1-thread-12] Initializing /data/brian/images/VENUS.pct: [testng] [2025-03-16 01:29:58,032] [pool-1-thread-7] Initializing /data/brian/images/WHT.PCT: [testng] [2025-03-16 01:30:01,000] [pool-1-thread-4] Initializing /data/brian/images/MARBLES_B32.pct: [testng] [2025-03-16 01:30:03,250] [pool-1-thread-10] Initializing /data/brian/images/BLU.PCT: [testng] [2025-03-16 01:30:18,037] [pool-1-thread-2] Initializing /data/jqd/32bit.pict: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 39 seconds Finished: SUCCESS