Skip to content
[Jenkins]Jenkins
log in

Console Output

Started by upstream project "BIOFORMATS-test-repo" build number 380
originally caused by:
 Started by upstream project "Trigger" build number 402
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins12720706832792421455.sh
+ '[' khoros = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_60127_merge_ci -v /uod/idr/repos/curated/khoros:/data -v /uod/idr-scratch/merge-ci/curated/khoros:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 03:52:00,272 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
   [testng] 03:52:00,273 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service.
   [testng] 03:52:00,273 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 03:52:00,274 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 03:52:00,275 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 03:52:00,275 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 03:52:00,275 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 03:52:00,275 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:52:00,276 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:52:00,276 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 03:52:00,277 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 03:52:00,277 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 03:52:00,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 03:52:00,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 03:52:00,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 03:52:00,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 03:52:00,478 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 03:52:00,478 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 03:52:00,478 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 03:52:00,479 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 03:52:00,479 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration.
   [testng] 03:52:00,480 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point
   [testng] 03:52:00,480 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 204 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2025-03-16 03:52:00,489] [main] java.version = 17.0.2
   [testng] 03:52:00,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 03:52:00,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:52:00,534 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-16_03-52-00.log]
   [testng] 03:52:00,535 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration.
   [testng] [2025-03-16 03:52:00,538] [main] testng.directory = /data
   [testng] [2025-03-16 03:52:00,538] [main] testng.configDirectory = /config
   [testng] [2025-03-16 03:52:00,547] [main] testng.multiplier = 1.0
   [testng] [2025-03-16 03:52:00,548] [main] testng.in-memory = false
   [testng] [2025-03-16 03:52:00,548] [main] testng.allow-missing = false
   [testng] [2025-03-16 03:52:00,548] [main] user.language = en
   [testng] [2025-03-16 03:52:00,549] [main] user.country = ${user.country}
   [testng] [2025-03-16 03:52:00,549] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2025-03-16 03:52:00,979] [main] ----------------------------------------
   [testng] [2025-03-16 03:52:00,979] [main] Total files: 10
   [testng] [2025-03-16 03:52:00,979] [main] Scan time: 0.43 s (43 ms/file)
   [testng] [2025-03-16 03:52:00,979] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 10 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2025-03-16 03:52:16,600] [pool-1-thread-1] Initializing /data/samples/ball.xv: 
   [testng] 03:52:16,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 03:52:16,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:52:16,602 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-16_03-52-16.log]
   [testng] 03:52:16,602 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3765c564 - End of configuration.
   [testng] [2025-03-16 03:52:17,395] [pool-1-thread-10] Initializing /data/samples/xray.xv: 
   [testng] 03:52:17,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 03:52:17,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:52:17,396 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-16_03-52-17.log]
   [testng] 03:52:17,396 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71e0142f - End of configuration.
   [testng] [2025-03-16 03:52:18,139] [pool-1-thread-9] Initializing /data/samples/head.xv: 
   [testng] 03:52:18,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 03:52:18,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:52:18,140 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-16_03-52-18.log]
   [testng] 03:52:18,140 |-INFO in ch.qos.logback.core.sift.SiftProcessor@697094c - End of configuration.
   [testng] [2025-03-16 03:52:18,946] [pool-1-thread-8] Initializing /data/samples/airport.xv: 
   [testng] 03:52:18,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 03:52:18,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:52:18,948 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-16_03-52-18.log]
   [testng] 03:52:18,948 |-INFO in ch.qos.logback.core.sift.SiftProcessor@649b1e1b - End of configuration.
   [testng] [2025-03-16 03:52:19,736] [pool-1-thread-7] Initializing /data/samples/lablabel.xv: 
   [testng] 03:52:19,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 03:52:19,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:52:19,737 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-16_03-52-19.log]
   [testng] 03:52:19,738 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6856aa68 - End of configuration.
   [testng] [2025-03-16 03:52:20,636] [pool-1-thread-6] Initializing /data/samples/wolf.xv: 
   [testng] 03:52:20,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 03:52:20,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:52:20,637 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-16_03-52-20.log]
   [testng] 03:52:20,638 |-INFO in ch.qos.logback.core.sift.SiftProcessor@358e1a56 - End of configuration.
   [testng] [2025-03-16 03:52:21,500] [pool-1-thread-5] Initializing /data/samples/head8bit.tif: 
   [testng] 03:52:21,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 03:52:21,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:52:21,501 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-16_03-52-21.log]
   [testng] 03:52:21,502 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7127c01a - End of configuration.
   [testng] [2025-03-16 03:52:24,866] [pool-1-thread-4] Initializing /data/samples/moon.xv: 
   [testng] 03:52:24,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 03:52:24,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:52:24,868 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-16_03-52-24.log]
   [testng] 03:52:24,868 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23e21520 - End of configuration.
   [testng] [2025-03-16 03:52:25,696] [pool-1-thread-3] Initializing /data/samples/lizard.xv: 
   [testng] 03:52:25,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 03:52:25,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:52:25,697 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-16_03-52-25.log]
   [testng] 03:52:25,698 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21bb88d9 - End of configuration.
   [testng] [2025-03-16 03:52:26,415] [pool-1-thread-2] Initializing /data/samples/kitten.xv: 
   [testng] 03:52:26,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 03:52:26,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:52:26,416 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-16_03-52-26.log]
   [testng] 03:52:26,416 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58d90431 - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 530, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 46 seconds
Finished: SUCCESS