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Started by upstream project "BIOFORMATS-test-repo" build number 380 originally caused by: Started by upstream project "Trigger" build number 402 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins16602613852507418689.sh + '[' ultraview = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_60153_merge_ci -v /uod/idr/repos/curated/ultraview:/data -v /uod/idr-scratch/merge-ci/curated/ultraview:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 06:10:02,660 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 06:10:02,662 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 06:10:02,662 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:10:02,663 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:10:02,663 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 06:10:02,663 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 06:10:02,664 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 06:10:02,664 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:10:02,664 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:10:02,665 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 06:10:02,665 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 06:10:02,665 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 06:10:02,826 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 06:10:02,826 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 06:10:02,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 06:10:02,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 06:10:02,854 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 06:10:02,854 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 06:10:02,855 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 06:10:02,855 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 06:10:02,855 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 06:10:02,856 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 06:10:02,856 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 192 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-16 06:10:02,865] [main] java.version = 17.0.2 [testng] 06:10:02,868 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:10:02,868 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:10:02,909 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-16_06-10-02.log] [testng] 06:10:02,910 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-03-16 06:10:02,912] [main] testng.directory = /data [testng] [2025-03-16 06:10:02,912] [main] testng.configDirectory = /config [testng] [2025-03-16 06:10:02,921] [main] testng.multiplier = 1.0 [testng] [2025-03-16 06:10:02,921] [main] testng.in-memory = false [testng] [2025-03-16 06:10:02,922] [main] testng.allow-missing = false [testng] [2025-03-16 06:10:02,922] [main] user.language = en [testng] [2025-03-16 06:10:02,922] [main] user.country = ${user.country} [testng] [2025-03-16 06:10:02,922] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-16 06:10:46,614] [main] ---------------------------------------- [testng] [2025-03-16 06:10:46,615] [main] Total files: 19 [testng] [2025-03-16 06:10:46,615] [main] Scan time: 43.692 s (2299 ms/file) [testng] [2025-03-16 06:10:46,615] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-16 06:11:54,876] [pool-1-thread-1] Initializing /data/todd/movement-1.htm: [testng] 06:11:54,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 06:11:54,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:11:54,878 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-16_06-11-54.log] [testng] 06:11:54,879 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53de0b9c - End of configuration. [testng] [2025-03-16 06:11:59,841] [pool-1-thread-12] Initializing /data/kate/Neutrophils#18/tiffs/Neutrophils#18.htm: [testng] 06:11:59,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 06:11:59,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:11:59,842 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-16_06-11-59.log] [testng] 06:11:59,843 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3767f546 - End of configuration. [testng] [2025-03-16 06:12:03,517] [pool-1-thread-11] Initializing /data/kate/GreenRedNoZnoT/GreenRedNoZNoT.htm: [testng] 06:12:03,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 06:12:03,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:12:03,518 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-16_06-12-03.log] [testng] 06:12:03,518 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1032b5ee - End of configuration. [testng] [2025-03-16 06:12:06,266] [pool-1-thread-10] Initializing /data/chad/UltraViewExample/doesNot/CHAD200920090331181253.HTM: [testng] 06:12:06,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 06:12:06,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:12:06,267 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-16_06-12-06.log] [testng] 06:12:06,267 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58f75cd7 - End of configuration. [testng] [2025-03-16 06:12:08,861] [pool-1-thread-9] Initializing /data/chad/UltraViewExamples/Bug/CHAD200820080724120123.HTM: [testng] 06:12:08,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 06:12:08,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:12:08,862 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-16_06-12-08.log] [testng] 06:12:08,862 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c3d5a57 - End of configuration. [testng] [2025-03-16 06:12:11,011] [pool-1-thread-8] Initializing /data/helio/2 copy Cnn g-tubGFP 111221#20/2 copy Cnn g-tubGFP 111221#20.htm: [testng] 06:12:11,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 06:12:11,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:12:11,012 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-16_06-12-11.log] [testng] 06:12:11,012 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e704b6a - End of configuration. [testng] [2025-03-16 06:12:14,223] [pool-1-thread-7] Initializing /data/kate/Neutrophils#18/Neutrophils#18.htm: [testng] 06:12:14,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 06:12:14,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:12:14,224 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-16_06-12-14.log] [testng] 06:12:14,225 |-INFO in ch.qos.logback.core.sift.SiftProcessor@165bfb69 - End of configuration. [testng] [2025-03-16 06:12:16,702] [pool-1-thread-6] Initializing /data/chad/DIC/EZRA200820080626102637.HTM: [testng] 06:12:16,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 06:12:16,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:12:16,703 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-16_06-12-16.log] [testng] 06:12:16,703 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bc7f0e1 - End of configuration. [testng] [2025-03-16 06:12:20,954] [pool-1-thread-5] Initializing /data/chad/UltraViewExamples/DIC_200820080724115245/CHAD200820080724115245.HTM: [testng] 06:12:20,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 06:12:20,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:12:20,955 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-16_06-12-20.log] [testng] 06:12:20,955 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61c670ec - End of configuration. [testng] [2025-03-16 06:12:25,061] [pool-1-thread-4] Initializing /data/kate/GreenRedNoZ3T/GreenRedNoZ5T.htm: [testng] 06:12:25,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 06:12:25,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:12:25,062 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-16_06-12-25.log] [testng] 06:12:25,063 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b0f2a78 - End of configuration. [testng] [2025-03-16 06:12:28,213] [pool-1-thread-3] Initializing /data/kate/GreenRed6ZnoT/GreenRed5ZNoT.htm: [testng] 06:12:28,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 06:12:28,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:12:28,214 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-16_06-12-28.log] [testng] 06:12:28,215 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43459c43 - End of configuration. [testng] [2025-03-16 06:12:30,837] [pool-1-thread-2] Initializing /data/chad/UltraViewExamples/Works/CHAD200820080724121453.HTM: [testng] 06:12:30,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:12:30,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:12:30,838 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-16_06-12-30.log] [testng] 06:12:30,839 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59d487fe - End of configuration. [testng] [2025-03-16 06:14:01,960] [pool-1-thread-5] Initializing /data/chad/DIC_IREN200820080107120042/IREN200820080107120042.HTM: [testng] [2025-03-16 06:14:05,399] [pool-1-thread-6] Initializing /data/chad/UltraViewExample/works/CHAD200920090331181355.HTM: [testng] [2025-03-16 06:14:27,197] [pool-1-thread-1] Initializing /data/chad/20080107130850/IREN200820080107130850.HTM: [testng] [2025-03-16 06:14:47,531] [pool-1-thread-11] Initializing /data/kate/GreenOnlyNoZnoT/GreenOnlyNoZnoT.htm: [testng] [2025-03-16 06:15:14,660] [pool-1-thread-5] Initializing /data/chad/UltraViewSamples/series 3/RAJE200820080619090142.HTM: [testng] [2025-03-16 06:15:33,581] [pool-1-thread-4] Initializing /data/kate/GreenRed6Z3T/GreenRed5Z5T.htm: [testng] 07:18:13,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 07:18:13,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:18:13,280 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-16_07-18-13.log] [testng] 07:18:13,280 |-INFO in ch.qos.logback.core.sift.SiftProcessor@700928e7 - End of configuration. [testng] 07:24:19,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:24:19,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:24:19,467 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-16_07-24-19.log] [testng] 07:24:19,468 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2af4129d - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 74 minutes 21 seconds Finished: SUCCESS