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Started by upstream project "BIOFORMATS-test-repo" build number 380 originally caused by: Started by upstream project "Trigger" build number 402 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins90842297714169555.sh + '[' imaris = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_60179_merge_ci -v /uod/idr/repos/curated/imaris:/data -v /uod/idr-scratch/merge-ci/curated/imaris:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 08:59:11,302 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 08:59:11,304 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 08:59:11,304 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:59:11,304 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:59:11,305 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 08:59:11,305 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 08:59:11,305 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 08:59:11,305 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:59:11,306 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:59:11,306 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 08:59:11,307 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 08:59:11,307 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 08:59:11,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:59:11,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:59:11,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:59:11,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:59:11,483 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:59:11,483 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:59:11,483 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:59:11,483 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:59:11,483 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 08:59:11,484 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 08:59:11,484 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 178 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-16 08:59:11,492] [main] java.version = 17.0.2 [testng] 08:59:11,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:59:11,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:59:11,532 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-16_08-59-11.log] [testng] 08:59:11,533 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-03-16 08:59:11,535] [main] testng.directory = /data [testng] [2025-03-16 08:59:11,535] [main] testng.configDirectory = /config [testng] [2025-03-16 08:59:11,543] [main] testng.multiplier = 1.0 [testng] [2025-03-16 08:59:11,544] [main] testng.in-memory = false [testng] [2025-03-16 08:59:11,544] [main] testng.allow-missing = false [testng] [2025-03-16 08:59:11,544] [main] user.language = en [testng] [2025-03-16 08:59:11,544] [main] user.country = ${user.country} [testng] [2025-03-16 08:59:11,544] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-16 09:03:15,893] [main] ---------------------------------------- [testng] [2025-03-16 09:03:15,893] [main] Total files: 73 [testng] [2025-03-16 09:03:15,893] [main] Scan time: 244.348 s (3347 ms/file) [testng] [2025-03-16 09:03:15,893] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 63 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-16 09:06:32,526] [pool-1-thread-1] Initializing /data/oliver/Stack2_float32Bit.ims: [testng] 09:06:32,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:06:32,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:06:32,528 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-16_09-06-32.log] [testng] 09:06:32,528 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ad36006 - End of configuration. [testng] [2025-03-16 09:06:35,559] [pool-1-thread-12] Initializing /data/public/davemason/Convallaria_3C_10T_confocal_IMS3.ims: [testng] 09:06:35,560 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 09:06:35,560 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:06:35,561 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-16_09-06-35.log] [testng] 09:06:35,561 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1826a61a - End of configuration. [testng] [2025-03-16 09:06:40,120] [pool-1-thread-11] Initializing /data/generated/10-31_E_t0000.ims: [testng] 09:06:40,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 09:06:40,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:06:40,121 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-16_09-06-40.log] [testng] 09:06:40,122 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ce80ab - End of configuration. [testng] [2025-03-16 09:06:41,733] [pool-1-thread-10] Initializing /data/generated/10-31_E_t0002.ims: [testng] 09:06:41,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 09:06:41,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:06:41,733 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-16_09-06-41.log] [testng] 09:06:41,734 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28209c41 - End of configuration. [testng] [2025-03-16 09:06:43,345] [pool-1-thread-9] Initializing /data/jason/imaris_5_5_demoimages/R18Demo.ims: [testng] 09:06:43,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 09:06:43,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:06:43,346 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-16_09-06-43.log] [testng] 09:06:43,346 |-INFO in ch.qos.logback.core.sift.SiftProcessor@708a47b3 - End of configuration. [testng] [2025-03-16 09:06:46,404] [pool-1-thread-8] Initializing /data/public/davemason/Convallaria_3C_1T_confocal.ims: [testng] 09:06:46,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 09:06:46,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:06:46,405 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-16_09-06-46.log] [testng] 09:06:46,405 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1cfae90e - End of configuration. [testng] [2025-03-16 09:06:49,059] [pool-1-thread-7] Initializing /data/public/davemason/Convallaria_3C_10T_confocal.ims: [testng] 09:06:49,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 09:06:49,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:06:49,060 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-16_09-06-49.log] [testng] 09:06:49,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@633a77eb - End of configuration. [testng] [2025-03-16 09:06:51,988] [pool-1-thread-6] Initializing /data/public/bitplane/lz4/croppedCDM3DLz4.ims: [testng] 09:06:51,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 09:06:51,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:06:51,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-16_09-06-51.log] [testng] 09:06:51,989 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41280a97 - End of configuration. [testng] [2025-03-16 09:06:54,995] [pool-1-thread-5] Initializing /data/public/davemason/Convallaria_3C_3T_35Z_confocal.ims: [testng] 09:06:54,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 09:06:54,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:06:54,997 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-16_09-06-54.log] [testng] 09:06:54,997 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70b82e27 - End of configuration. [testng] [2025-03-16 09:06:57,895] [pool-1-thread-4] Initializing /data/jake/p75Cherry M2 010-3~B.ims: [testng] 09:06:57,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:06:57,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:06:57,896 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-16_09-06-57.log] [testng] 09:06:57,896 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c76defd - End of configuration. [testng] [2025-03-16 09:07:01,356] [pool-1-thread-3] Initializing /data/jcb/fig 6B GFP-AP-2d.ims: [testng] 09:07:01,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 09:07:01,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:07:01,357 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-16_09-07-01.log] [testng] 09:07:01,358 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50566609 - End of configuration. [testng] [2025-03-16 09:07:04,420] [pool-1-thread-2] Initializing /data/qa-17839/Fusion _Stack.ims: [testng] 09:07:04,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:07:04,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:07:04,421 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-16_09-07-04.log] [testng] 09:07:04,421 |-INFO in ch.qos.logback.core.sift.SiftProcessor@238ff17 - End of configuration. BUILD SUCCESSFUL Total time: 12 minutes 36 seconds Finished: SUCCESS