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Started by upstream project "BIOFORMATS-test-repo" build number 380 originally caused by: Started by upstream project "Trigger" build number 402 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins7612017701191873513.sh + '[' ivision = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_60217_merge_ci -v /uod/idr/repos/curated/ivision:/data -v /uod/idr-scratch/merge-ci/curated/ivision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 23:53:52,876 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 23:53:52,877 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 23:53:52,877 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 23:53:52,878 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 23:53:52,878 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 23:53:52,879 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 23:53:52,879 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 23:53:52,879 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 23:53:52,879 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 23:53:52,880 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 23:53:52,880 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 23:53:52,880 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 23:53:53,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 23:53:53,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 23:53:53,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 23:53:53,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 23:53:53,055 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 23:53:53,055 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 23:53:53,055 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 23:53:53,056 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 23:53:53,056 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 23:53:53,056 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 23:53:53,056 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 177 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-16 23:53:53,064] [main] java.version = 17.0.2 [testng] 23:53:53,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 23:53:53,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:53:53,104 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-16_23-53-53.log] [testng] 23:53:53,105 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-03-16 23:53:53,107] [main] testng.directory = /data [testng] [2025-03-16 23:53:53,107] [main] testng.configDirectory = /config [testng] [2025-03-16 23:53:53,115] [main] testng.multiplier = 1.0 [testng] [2025-03-16 23:53:53,116] [main] testng.in-memory = false [testng] [2025-03-16 23:53:53,116] [main] testng.allow-missing = false [testng] [2025-03-16 23:53:53,116] [main] user.language = en [testng] [2025-03-16 23:53:53,116] [main] user.country = ${user.country} [testng] [2025-03-16 23:53:53,116] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-16 23:54:01,800] [main] ---------------------------------------- [testng] [2025-03-16 23:54:01,800] [main] Total files: 17 [testng] [2025-03-16 23:54:01,800] [main] Scan time: 8.684 s (510 ms/file) [testng] [2025-03-16 23:54:01,800] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 17 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-16 23:54:12,539] [pool-1-thread-1] Initializing /data/jcb/200810162/mutBA plus bio.ipm: [testng] 23:54:12,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 23:54:12,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:54:12,540 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-16_23-54-12.log] [testng] 23:54:12,541 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6514b7c1 - End of configuration. [testng] [2025-03-16 23:54:13,222] [pool-1-thread-12] Initializing /data/jcb/JCB 200905007 Fig 7B gfp center: [testng] 23:54:13,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 23:54:13,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:54:13,223 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-16_23-54-13.log] [testng] 23:54:13,223 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e6b4162 - End of configuration. [testng] [2025-03-16 23:54:13,735] [pool-1-thread-11] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).GOOD.ipm: [testng] 23:54:13,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 23:54:13,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:54:13,736 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-16_23-54-13.log] [testng] 23:54:13,736 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c74810c - End of configuration. [testng] [2025-03-16 23:54:14,345] [pool-1-thread-10] Initializing /data/jcb/200810162/wt ba no bio.ipm: [testng] 23:54:14,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 23:54:14,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:54:14,346 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-16_23-54-14.log] [testng] 23:54:14,346 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28fc9a21 - End of configuration. [testng] [2025-03-16 23:54:14,962] [pool-1-thread-9] Initializing /data/christopher/Color48 Copy.ipm: [testng] 23:54:14,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 23:54:14,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:54:14,963 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-16_23-54-14.log] [testng] 23:54:14,963 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74789ad0 - End of configuration. [testng] [2025-03-16 23:54:15,535] [pool-1-thread-8] Initializing /data/samples/08Bit 320x256xthree.ipm: [testng] 23:54:15,536 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 23:54:15,536 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:54:15,537 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-16_23-54-15.log] [testng] 23:54:15,537 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73a1de17 - End of configuration. [testng] [2025-03-16 23:54:16,236] [pool-1-thread-7] Initializing /data/jcb/200810162/mut BA no bio.ipm: [testng] 23:54:16,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 23:54:16,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:54:16,237 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-16_23-54-16.log] [testng] 23:54:16,237 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7139e823 - End of configuration. [testng] [2025-03-16 23:54:16,753] [pool-1-thread-6] Initializing /data/samples/16-bit 320x256x3.ipm: [testng] 23:54:16,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 23:54:16,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:54:16,754 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-16_23-54-16.log] [testng] 23:54:16,754 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52712091 - End of configuration. [testng] [2025-03-16 23:54:17,341] [pool-1-thread-5] Initializing /data/nigel/CD48_75_24hrColor.ipm: [testng] 23:54:17,341 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 23:54:17,341 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:54:17,342 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-16_23-54-17.log] [testng] 23:54:17,342 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f0e9cfc - End of configuration. [testng] [2025-03-16 23:54:17,667] [pool-1-thread-4] Initializing /data/christopher/122308_I_MPT_4x-Test1.ipm: [testng] 23:54:17,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 23:54:17,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:54:17,668 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-16_23-54-17.log] [testng] 23:54:17,668 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dffaa71 - End of configuration. [testng] [2025-03-16 23:54:18,202] [pool-1-thread-3] Initializing /data/samples/08Bit 320x256x1.ipm: [testng] 23:54:18,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 23:54:18,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:54:18,203 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-16_23-54-18.log] [testng] 23:54:18,203 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51678a7 - End of configuration. [testng] [2025-03-16 23:54:18,685] [pool-1-thread-2] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).BAD.ipm: [testng] 23:54:18,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 23:54:18,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:54:18,686 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-16_23-54-18.log] [testng] 23:54:18,686 |-INFO in ch.qos.logback.core.sift.SiftProcessor@778fe85d - End of configuration. [testng] [2025-03-16 23:54:28,028] [pool-1-thread-3] Initializing /data/samples/16bit 320x256x1.ipm: [testng] [2025-03-16 23:54:28,460] [pool-1-thread-11] Initializing /data/jcb/200810162/wt BA plus bio.ipm: [testng] [2025-03-16 23:54:28,882] [pool-1-thread-6] Initializing /data/christopher/122308_I_MPT_4x-test2.ipm: [testng] [2025-03-16 23:54:29,348] [pool-1-thread-8] Initializing /data/samples/48bit 150x100x3.ipm: [testng] [2025-03-16 23:54:29,805] [pool-1-thread-5] Initializing /data/samples/24bit 300x200x3.ipm: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 901, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 45 seconds Finished: SUCCESS