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Started by upstream project "BIOFORMATS-test-repo" build number 381 originally caused by: Started by upstream project "Trigger" build number 403 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins633515961840953041.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_60243_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:44:01,383 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 02:44:01,385 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 02:44:01,385 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:44:01,386 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:44:01,386 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:44:01,387 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:44:01,387 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:44:01,387 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:44:01,387 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:44:01,388 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:44:01,388 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:44:01,388 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:44:01,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:44:01,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:44:01,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:44:01,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:44:01,637 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:44:01,638 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:44:01,638 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:44:01,638 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:44:01,638 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 02:44:01,639 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 02:44:01,639 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 252 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-17 02:44:01,648] [main] java.version = 1.8.0_342 [testng] 02:44:01,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:44:01,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:01,696 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-17_02-44-01.log] [testng] 02:44:01,698 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-17 02:44:01,700] [main] testng.directory = /data [testng] [2025-03-17 02:44:01,700] [main] testng.configDirectory = /config [testng] [2025-03-17 02:44:01,711] [main] testng.multiplier = 1.0 [testng] [2025-03-17 02:44:01,712] [main] testng.in-memory = false [testng] [2025-03-17 02:44:01,712] [main] testng.allow-missing = false [testng] [2025-03-17 02:44:01,712] [main] user.language = fr [testng] [2025-03-17 02:44:01,712] [main] user.country = FR [testng] [2025-03-17 02:44:01,712] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-17 02:44:55,519] [main] ---------------------------------------- [testng] [2025-03-17 02:44:55,519] [main] Total files: 21 [testng] [2025-03-17 02:44:55,519] [main] Scan time: 53.807 s (2562 ms/file) [testng] [2025-03-17 02:44:55,519] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-17 02:46:12,314] [pool-1-thread-1] Initializing /data/stefan/001_q01.txt: [testng] 02:46:12,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:46:12,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:12,316 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-17_02-46-12.log] [testng] 02:46:12,316 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58c4eefc - End of configuration. [testng] [2025-03-17 02:46:16,063] [pool-1-thread-12] Initializing /data/stefan/001_q12.txt: [testng] 02:46:16,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:46:16,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:16,064 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-17_02-46-16.log] [testng] 02:46:16,065 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65024356 - End of configuration. [testng] [2025-03-17 02:46:24,468] [pool-1-thread-11] Initializing /data/stefan/001_q04.txt: [testng] 02:46:24,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:46:24,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:24,469 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-17_02-46-24.log] [testng] 02:46:24,470 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f0b7dd2 - End of configuration. [testng] [2025-03-17 02:46:28,793] [pool-1-thread-10] Initializing /data/stefan/001_q08.txt: [testng] 02:46:28,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:46:28,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:28,794 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-17_02-46-28.log] [testng] 02:46:28,795 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7dcf42bb - End of configuration. [testng] [2025-03-17 02:46:38,907] [pool-1-thread-9] Initializing /data/stefan/001_q14.txt: [testng] 02:46:38,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:46:38,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:38,908 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-17_02-46-38.log] [testng] 02:46:38,908 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13e8af55 - End of configuration. [testng] [2025-03-17 02:46:42,311] [pool-1-thread-8] Initializing /data/stefan/001_q02.txt: [testng] 02:46:42,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:46:42,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:42,312 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-17_02-46-42.log] [testng] 02:46:42,313 |-INFO in ch.qos.logback.core.sift.SiftProcessor@561a9cd6 - End of configuration. [testng] [2025-03-17 02:46:46,991] [pool-1-thread-7] Initializing /data/stefan/001_q16.txt: [testng] 02:46:46,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:46:46,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:46,992 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-17_02-46-46.log] [testng] 02:46:46,992 |-INFO in ch.qos.logback.core.sift.SiftProcessor@308b906f - End of configuration. [testng] [2025-03-17 02:46:51,987] [pool-1-thread-6] Initializing /data/stefan/001_q11.txt: [testng] 02:46:51,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:46:51,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:51,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-17_02-46-51.log] [testng] 02:46:51,989 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a7c90f7 - End of configuration. [testng] [2025-03-17 02:47:00,910] [pool-1-thread-5] Initializing /data/stefan/001_q06.txt: [testng] 02:47:00,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:47:00,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:47:00,910 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-17_02-47-00.log] [testng] 02:47:00,911 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f561cc3 - End of configuration. [testng] [2025-03-17 02:47:05,787] [pool-1-thread-4] Initializing /data/stefan/001_q10.txt: [testng] 02:47:05,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:47:05,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:47:05,788 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-17_02-47-05.log] [testng] 02:47:05,788 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a570128 - End of configuration. [testng] [2025-03-17 02:47:11,989] [pool-1-thread-3] Initializing /data/stefan/001_q07.txt: [testng] 02:47:11,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:47:11,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:47:11,990 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-17_02-47-11.log] [testng] 02:47:11,991 |-INFO in ch.qos.logback.core.sift.SiftProcessor@284df8f8 - End of configuration. [testng] [2025-03-17 02:47:17,718] [pool-1-thread-2] Initializing /data/stefan/001_q05.txt: [testng] 02:47:17,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:47:17,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:47:17,719 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-17_02-47-17.log] [testng] 02:47:17,719 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29407126 - End of configuration. [testng] [2025-03-17 02:48:09,953] [pool-1-thread-1] Initializing /data/stefan/001_q15.txt: [testng] [2025-03-17 02:48:13,424] [pool-1-thread-11] Initializing /data/stefan/001_q17.txt: [testng] [2025-03-17 02:48:16,273] [pool-1-thread-8] Initializing /data/stefan/001_q09.txt: [testng] [2025-03-17 02:48:23,264] [pool-1-thread-5] Initializing /data/stefan/001_q13.txt: [testng] [2025-03-17 02:48:26,084] [pool-1-thread-9] Initializing /data/stefan/001_q03.txt: [testng] [2025-03-17 02:48:31,717] [pool-1-thread-7] Initializing /data/stefan/001_q18.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 6 minutes 18 seconds Finished: SUCCESS