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Started by upstream project "BIOFORMATS-test-repo" build number 381 originally caused by: Started by upstream project "Trigger" build number 403 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins4182420383353887150.sh + '[' zip = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_60249_merge_ci -v /uod/idr/repos/curated/zip:/data -v /uod/idr-scratch/merge-ci/curated/zip:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:53:58,979 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 02:53:58,981 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 02:53:58,981 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:53:58,982 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:53:58,982 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:53:58,982 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:53:58,983 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:53:58,983 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:53:58,983 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:53:58,983 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:53:58,984 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:53:58,984 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:53:59,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:53:59,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:53:59,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:53:59,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:53:59,236 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:53:59,236 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:53:59,236 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:53:59,236 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:53:59,236 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 02:53:59,237 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 02:53:59,237 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 254 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-17 02:53:59,246] [main] java.version = 1.8.0_342 [testng] 02:53:59,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:53:59,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:53:59,293 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-17_02-53-59.log] [testng] 02:53:59,294 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-17 02:53:59,296] [main] testng.directory = /data [testng] [2025-03-17 02:53:59,296] [main] testng.configDirectory = /config [testng] [2025-03-17 02:53:59,307] [main] testng.multiplier = 1.0 [testng] [2025-03-17 02:53:59,308] [main] testng.in-memory = false [testng] [2025-03-17 02:53:59,308] [main] testng.allow-missing = false [testng] [2025-03-17 02:53:59,308] [main] user.language = fr [testng] [2025-03-17 02:53:59,308] [main] user.country = FR [testng] [2025-03-17 02:53:59,308] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-17 02:54:00,003] [main] ---------------------------------------- [testng] [2025-03-17 02:54:00,003] [main] Total files: 22 [testng] [2025-03-17 02:54:00,004] [main] Scan time: 0.695 s (31 ms/file) [testng] [2025-03-17 02:54:00,004] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 22 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-17 02:59:04,375] [pool-1-thread-1] Initializing /data/samples/sdub.zip: [testng] 02:59:04,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:59:04,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:59:04,376 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-17_02-59-04.log] [testng] 02:59:04,377 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61eedde3 - End of configuration. [testng] [2025-03-17 02:59:06,370] [pool-1-thread-12] Initializing /data/imagej/mri-stack.zip: [testng] 02:59:06,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:59:06,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:59:06,371 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-17_02-59-06.log] [testng] 02:59:06,371 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28ba72e8 - End of configuration. [testng] [2025-03-17 02:59:14,836] [pool-1-thread-11] Initializing /data/imagej/hela-cells.zip: [testng] 02:59:14,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:59:14,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:59:14,837 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-17_02-59-14.log] [testng] 02:59:14,838 |-INFO in ch.qos.logback.core.sift.SiftProcessor@227449e4 - End of configuration. [testng] [2025-03-17 02:59:30,099] [pool-1-thread-10] Initializing /data/imagej/watershed-animation.zip: [testng] 02:59:30,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:59:30,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:59:30,100 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-17_02-59-30.log] [testng] 02:59:30,101 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ad47c4a - End of configuration. [testng] [2025-03-17 02:59:39,382] [pool-1-thread-9] Initializing /data/imagej/4D-Stack(256x256x20x10).zip: [testng] 02:59:39,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:59:39,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:59:39,383 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-17_02-59-39.log] [testng] 02:59:39,383 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e13e17a - End of configuration. [testng] [2025-03-17 03:00:04,870] [pool-1-thread-8] Initializing /data/imagej/gel-electrophoresis.zip: [testng] 03:00:04,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:00:04,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:00:04,871 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-17_03-00-04.log] [testng] 03:00:04,871 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c12ba89 - End of configuration. [testng] [2025-03-17 03:00:13,034] [pool-1-thread-7] Initializing /data/imagej/cheetah_256_8.tif.zip: [testng] 03:00:13,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:00:13,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:00:13,035 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-17_03-00-13.log] [testng] 03:00:13,035 |-INFO in ch.qos.logback.core.sift.SiftProcessor@580c620f - End of configuration. [testng] [2025-03-17 03:00:21,056] [pool-1-thread-6] Initializing /data/imagej/xrays.zip: [testng] 03:00:21,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:00:21,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:00:21,056 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-17_03-00-21.log] [testng] 03:00:21,057 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b695f44 - End of configuration. [testng] [2025-03-17 03:00:24,968] [pool-1-thread-5] Initializing /data/imagej/confocal-stack.zip: [testng] 03:00:24,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:00:24,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:00:24,969 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-17_03-00-24.log] [testng] 03:00:24,970 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bb00d6a - End of configuration. [testng] [2025-03-17 03:00:49,619] [pool-1-thread-4] Initializing /data/imagej/FluorescentCells.zip: [testng] 03:00:49,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:00:49,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:00:49,620 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-17_03-00-49.log] [testng] 03:00:49,620 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10c088fa - End of configuration. [testng] [2025-03-17 03:01:00,076] [pool-1-thread-3] Initializing /data/imagej/fat-cells.zip: [testng] 03:01:00,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:01:00,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:01:00,077 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-17_03-01-00.log] [testng] 03:01:00,078 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43fedfb2 - End of configuration. [testng] [2025-03-17 03:01:13,063] [pool-1-thread-2] Initializing /data/imagej/Rat_Hippocampal_Neuron2.zip: [testng] 03:01:13,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:01:13,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:01:13,064 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-17_03-01-13.log] [testng] 03:01:13,064 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a72d5df - End of configuration. [testng] [2025-03-17 03:02:13,631] [pool-1-thread-1] Initializing /data/imagej/se3.zip: [testng] [2025-03-17 03:03:18,356] [pool-1-thread-6] Initializing /data/imagej/RatBrain.zip: [testng] [2025-03-17 03:03:38,922] [pool-1-thread-10] Initializing /data/imagej/blood-brain-barrier.zip: [testng] [2025-03-17 03:04:02,948] [pool-1-thread-12] Initializing /data/imagej/Rat_Hippocampal_Neuron.zip: [testng] [2025-03-17 03:04:25,107] [pool-1-thread-4] Initializing /data/imagej/scala-media.zip: [testng] [2025-03-17 03:04:33,155] [pool-1-thread-11] Initializing /data/imagej/confocal-series.zip: [testng] [2025-03-17 03:04:52,930] [pool-1-thread-7] Initializing /data/imagej/3D_Chromosome.zip: [testng] [2025-03-17 03:06:01,783] [pool-1-thread-3] Initializing /data/imagej/flybrain.zip: [testng] [2025-03-17 03:06:19,204] [pool-1-thread-6] Initializing /data/imagej/m51.zip: [testng] [2025-03-17 03:06:33,094] [pool-1-thread-2] Initializing /data/samples/bat-cochlea-volume.zip: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1166, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 19 minutes 5 seconds Finished: SUCCESS