![[Jenkins]](/jenkins/static/3d58bc78/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 381 originally caused by: Started by upstream project "Trigger" build number 403 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins16053889665592310438.sh + '[' imspector = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_60349_merge_ci -v /uod/idr/repos/curated/imspector:/data -v /uod/idr-scratch/merge-ci/curated/imspector:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 16:47:24,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 16:47:24,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 16:47:24,653 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 16:47:24,653 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 16:47:24,660 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 16:47:24,661 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 16:47:24,661 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 16:47:24,661 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 16:47:24,661 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7e0b85f9 - End of configuration. [testng] 16:47:24,662 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6a28ffa4 - Registering current configuration as safe fallback point [testng] 16:47:24,662 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48ae9b55 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 841 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-17 16:47:24,672] [main] java.version = 1.8.0_342 [testng] 16:47:24,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 16:47:24,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:47:24,732 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-17_16-47-24.log] [testng] 16:47:24,733 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-17 16:47:24,735] [main] testng.directory = /data [testng] [2025-03-17 16:47:24,735] [main] testng.configDirectory = /config [testng] [2025-03-17 16:47:24,790] [main] testng.multiplier = 1.0 [testng] [2025-03-17 16:47:24,790] [main] testng.in-memory = false [testng] [2025-03-17 16:47:24,790] [main] testng.allow-missing = false [testng] [2025-03-17 16:47:24,790] [main] user.language = fr [testng] [2025-03-17 16:47:24,790] [main] user.country = FR [testng] [2025-03-17 16:47:24,790] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-17 16:48:08,427] [main] ---------------------------------------- [testng] [2025-03-17 16:48:08,427] [main] Total files: 31 [testng] [2025-03-17 16:48:08,427] [main] Scan time: 43.637 s (1407 ms/file) [testng] [2025-03-17 16:48:08,427] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 29 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-17 16:49:06,630] [pool-1-thread-1] Initializing /data/qa-7936/02 - not working.msr: [testng] 16:49:06,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 16:49:06,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:49:06,633 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-17_16-49-06.log] [testng] 16:49:06,633 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cce1c77 - End of configuration. [testng] [2025-03-17 16:49:07,900] [pool-1-thread-12] Initializing /data/qa-17102/2 channels FLIM z stack.msr: [testng] 16:49:07,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 16:49:07,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:49:07,902 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-17_16-49-07.log] [testng] 16:49:07,902 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c3df192 - End of configuration. [testng] [2025-03-17 16:49:09,419] [pool-1-thread-11] Initializing /data/qa-17102/1 channel binning 8 time series.msr: [testng] 16:49:09,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 16:49:09,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:49:09,421 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-17_16-49-09.log] [testng] 16:49:09,421 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3757529b - End of configuration. [testng] [2025-03-17 16:49:10,713] [pool-1-thread-10] Initializing /data/qa-17102/1 channel binning 4 time series.msr: [testng] 16:49:10,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 16:49:10,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:49:10,714 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-17_16-49-10.log] [testng] 16:49:10,715 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69f8db7c - End of configuration. [testng] [2025-03-17 16:49:11,881] [pool-1-thread-9] Initializing /data/paul/msr files - Paul Thomas UEA/Two channel Zstack.msr: [testng] 16:49:11,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 16:49:11,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:49:11,882 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-17_16-49-11.log] [testng] 16:49:11,883 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75021bf2 - End of configuration. [testng] [2025-03-17 16:49:13,424] [pool-1-thread-8] Initializing /data/paul/msr files - Paul Thomas UEA/Single channel single slice 4 tiles.msr: [testng] 16:49:13,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 16:49:13,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:49:13,425 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-17_16-49-13.log] [testng] 16:49:13,425 |-INFO in ch.qos.logback.core.sift.SiftProcessor@341e4376 - End of configuration. [testng] [2025-03-17 16:49:15,022] [pool-1-thread-7] Initializing /data/paul/msr files - Paul Thomas UEA/Lifetime file.msr: [testng] 16:49:15,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 16:49:15,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:49:15,023 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-17_16-49-15.log] [testng] 16:49:15,024 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a0b7298 - End of configuration. [testng] [2025-03-17 16:49:16,402] [pool-1-thread-6] Initializing /data/qa-7992/IllegalArgumentException.msr: [testng] 16:49:16,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 16:49:16,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:49:16,403 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-17_16-49-16.log] [testng] 16:49:16,404 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ebb72e1 - End of configuration. [testng] [2025-03-17 16:49:18,116] [pool-1-thread-5] Initializing /data/qa-7702/trim- scope msr z-stacks/02 - Arf_FLIM_z-stack_1.msr: [testng] 16:49:18,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 16:49:18,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:49:18,117 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-17_16-49-18.log] [testng] 16:49:18,118 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cf9d03f - End of configuration. [testng] [2025-03-17 16:49:19,465] [pool-1-thread-4] Initializing /data/paul/msr files - Paul Thomas UEA/Single channel Zstack.msr: [testng] 16:49:19,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 16:49:19,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:49:19,466 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-17_16-49-19.log] [testng] 16:49:19,467 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60b7bdf5 - End of configuration. [testng] [2025-03-17 16:49:21,006] [pool-1-thread-3] Initializing /data/qa-7992/ArrayIndexOutOfBoundsException.msr: [testng] 16:49:21,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 16:49:21,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:49:21,007 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-17_16-49-21.log] [testng] 16:49:21,007 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e7055e - End of configuration. [testng] [2025-03-17 16:49:22,819] [pool-1-thread-2] Initializing /data/qa-7668/01 - RhodamineB - FLIM test - 4 binning_12-08-53_TCSPC_C0.ome.tif: [testng] 16:49:22,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 16:49:22,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:49:22,820 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-17_16-49-22.log] [testng] 16:49:22,820 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45bc8dde - End of configuration. [testng] [2025-03-17 16:49:36,577] [pool-1-thread-1] Initializing /data/qa-7936/01 - working.msr: [testng] [2025-03-17 16:49:37,969] [pool-1-thread-6] Initializing /data/public/zenodo-10476252/test.msr: [testng] [2025-03-17 16:49:39,331] [pool-1-thread-3] Initializing /data/qa-7936/z-TC - for LOCI.msr: [testng] [2025-03-17 16:49:40,523] [pool-1-thread-5] Initializing /data/qa-7702/trim- scope msr z-stacks/02 - 500x500x105_1046x1046x57_1.875um_steps.msr: [testng] [2025-03-17 16:49:41,682] [pool-1-thread-10] Initializing /data/qa-7658/Document1_13-09-25.msr: [testng] [2025-03-17 16:49:42,895] [pool-1-thread-7] Initializing /data/qa-11369/02 - 70 - 1 - tp1 - x16 TCSPC.msr: [testng] [2025-03-17 16:49:44,111] [pool-1-thread-12] Initializing /data/qa-4929/OMERO data/01 - 27hpf_f2-GFP-wt1b+rfp-flk1 - 3channel-z-stack.msr: [testng] [2025-03-17 16:49:45,310] [pool-1-thread-11] Initializing /data/qa-11369/01 - 770nm FITC - HybridPMT.msr: [testng] [2025-03-17 16:49:46,508] [pool-1-thread-9] Initializing /data/qa-7702/trim- scope msr z-stacks/02 - 500x500x105_1046x1046x57_1.875um_steps/02 - 500x500x105_1046x1046x57_1_875um_steps_11-34-02_PMT - PMT [PMT1] _C0.ome.tif: [testng] [2025-03-17 16:49:52,254] [pool-1-thread-4] Initializing /data/qa-7992/NegativeArraySizeException_small.msr: [testng] [2025-03-17 16:49:53,518] [pool-1-thread-8] Initializing /data/paul/msr files - Paul Thomas UEA/Two channel single slice.msr: [testng] [2025-03-17 16:49:56,590] [pool-1-thread-2] Initializing /data/qa-7668/01 - RhodamineB - FLIM test - 4 binning.msr: [testng] [2025-03-17 16:50:06,573] [pool-1-thread-8] Initializing /data/qa-27309/181109_e3_cut.msr: [testng] [2025-03-17 16:50:07,934] [pool-1-thread-6] Initializing /data/qa-4929/OMERO data/01 - urea_irf_image_TCSPC-data.msr: [testng] [2025-03-17 16:50:09,205] [pool-1-thread-10] Initializing /data/qa-7702/trim- scope msr z-stacks/02 - Arf_z-stack_FLIM_TDC_C0.ome.tif: [testng] [2025-03-17 16:50:11,362] [pool-1-thread-7] Initializing /data/qa-17102/2 channels FLIM time series.msr: [testng] [2025-03-17 16:50:12,517] [pool-1-thread-11] Initializing /data/qa-9468/HPDR10467U-40-VD0191-red-100pc-without-tube.msr: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1537, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 3 minutes 19 seconds Finished: SUCCESS