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Started by upstream project "BIOFORMATS-test-repo" build number 381 originally caused by: Started by upstream project "Trigger" build number 403 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins12485188786921258773.sh + '[' biorad-gel = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_60361_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 18:01:45,577 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 18:01:45,579 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 18:01:45,579 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 18:01:45,580 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 18:01:45,580 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 18:01:45,580 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 18:01:45,581 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 18:01:45,581 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 18:01:45,581 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 18:01:45,582 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 18:01:45,582 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 18:01:45,582 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 18:01:45,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 18:01:45,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 18:01:45,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 18:01:45,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 18:01:45,852 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 18:01:45,853 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 18:01:45,853 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 18:01:45,853 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 18:01:45,853 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 18:01:45,854 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 18:01:45,854 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 273 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-17 18:01:45,864] [main] java.version = 1.8.0_342 [testng] 18:01:45,868 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 18:01:45,868 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:01:45,916 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-17_18-01-45.log] [testng] 18:01:45,918 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-17 18:01:45,920] [main] testng.directory = /data [testng] [2025-03-17 18:01:45,921] [main] testng.configDirectory = /config [testng] [2025-03-17 18:01:45,934] [main] testng.multiplier = 1.0 [testng] [2025-03-17 18:01:45,935] [main] testng.in-memory = false [testng] [2025-03-17 18:01:45,935] [main] testng.allow-missing = false [testng] [2025-03-17 18:01:45,935] [main] user.language = fr [testng] [2025-03-17 18:01:45,935] [main] user.country = FR [testng] [2025-03-17 18:01:45,935] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-17 18:01:55,138] [main] ---------------------------------------- [testng] [2025-03-17 18:01:55,138] [main] Total files: 32 [testng] [2025-03-17 18:01:55,138] [main] Scan time: 9.203 s (287 ms/file) [testng] [2025-03-17 18:01:55,138] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 32 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-17 18:03:00,939] [pool-1-thread-1] Initializing /data/sylvain/2009-10-26 14hr 59min: [testng] 18:03:00,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 18:03:00,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:03:00,941 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-17_18-03-00.log] [testng] 18:03:00,941 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76956284 - End of configuration. [testng] [2025-03-17 18:03:02,240] [pool-1-thread-12] Initializing /data/sylvain/2009-10-23 12hr 18min: [testng] 18:03:02,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 18:03:02,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:03:02,241 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-17_18-03-02.log] [testng] 18:03:02,241 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1510763b - End of configuration. [testng] [2025-03-17 18:03:03,742] [pool-1-thread-11] Initializing /data/qa-29459/bad.1sc: [testng] 18:03:03,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 18:03:03,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:03:03,743 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-17_18-03-03.log] [testng] 18:03:03,743 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11ff365e - End of configuration. [testng] [2025-03-17 18:03:05,054] [pool-1-thread-10] Initializing /data/sylvain/2009-10-26 14hr 59min.tif: [testng] 18:03:05,055 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 18:03:05,055 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:03:05,055 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-17_18-03-05.log] [testng] 18:03:05,056 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3951adb - End of configuration. [testng] [2025-03-17 18:03:09,306] [pool-1-thread-9] Initializing /data/geert/good example1.1sc.jpg: [testng] 18:03:09,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 18:03:09,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:03:09,307 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-17_18-03-09.log] [testng] 18:03:09,307 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f7a7f15 - End of configuration. [testng] [2025-03-17 18:03:09,569] [pool-1-thread-8] Initializing /data/qa-29469/good.1sc: [testng] 18:03:09,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 18:03:09,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:03:09,570 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-17_18-03-09.log] [testng] 18:03:09,570 |-INFO in ch.qos.logback.core.sift.SiftProcessor@def46be - End of configuration. [testng] [2025-03-17 18:03:10,191] [pool-1-thread-7] Initializing /data/geert/bad example1.1sc: [testng] 18:03:10,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 18:03:10,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:03:10,192 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-17_18-03-10.log] [testng] 18:03:10,192 |-INFO in ch.qos.logback.core.sift.SiftProcessor@485ab2bf - End of configuration. [testng] [2025-03-17 18:03:11,020] [pool-1-thread-6] Initializing /data/david/Original Biorad Gel format file.1sc: [testng] 18:03:11,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 18:03:11,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:03:11,021 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-17_18-03-11.log] [testng] 18:03:11,022 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38047a45 - End of configuration. [testng] [2025-03-17 18:03:11,951] [pool-1-thread-5] Initializing /data/qa-29459/bad.jpg: [testng] 18:03:11,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 18:03:11,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:03:11,951 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-17_18-03-11.log] [testng] 18:03:11,952 |-INFO in ch.qos.logback.core.sift.SiftProcessor@663bb6a7 - End of configuration. [testng] [2025-03-17 18:03:12,251] [pool-1-thread-4] Initializing /data/david/Converted in Quantity One (Biorad).tiff: [testng] 18:03:12,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 18:03:12,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:03:12,252 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-17_18-03-12.log] [testng] 18:03:12,252 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5787bc5a - End of configuration. [testng] [2025-03-17 18:03:16,628] [pool-1-thread-3] Initializing /data/sylvain/2009-10-23 12hr 18min.tif: [testng] 18:03:16,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 18:03:16,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:03:16,629 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-17_18-03-16.log] [testng] 18:03:16,630 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25c6a7b1 - End of configuration. [testng] [2025-03-17 18:03:22,816] [pool-1-thread-2] Initializing /data/david/Opened in imageJ.tiff: [testng] 18:03:22,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 18:03:22,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:03:22,817 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-17_18-03-22.log] [testng] 18:03:22,817 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f9d0650 - End of configuration. [testng] [2025-03-17 18:03:39,652] [pool-1-thread-6] Initializing /data/sylvain/2009-10-23 12hr 19min: [testng] [2025-03-17 18:03:41,007] [pool-1-thread-8] Initializing /data/qa-16880/c-src v7.1sc: [testng] [2025-03-17 18:03:42,027] [pool-1-thread-5] Initializing /data/geert/bad example1.1sc.jpg: [testng] [2025-03-17 18:03:42,419] [pool-1-thread-11] Initializing /data/sylvain/2009-10-26 14hr 57min: [testng] [2025-03-17 18:03:44,038] [pool-1-thread-9] Initializing /data/sylvain/2009-10-26 14hr 57min.tif: [testng] [2025-03-17 18:03:49,023] [pool-1-thread-7] Initializing /data/keith/PF020426MRSA v2.1sc: [testng] [2025-03-17 18:03:50,322] [pool-1-thread-12] Initializing /data/samples/imagesEight.1sc: [testng] [2025-03-17 18:03:51,421] [pool-1-thread-1] Initializing /data/samples/Criterion.1sc: [testng] [2025-03-17 18:04:04,480] [pool-1-thread-12] Initializing /data/qa-29469/bad2.1sc: [testng] [2025-03-17 18:04:06,364] [pool-1-thread-7] Initializing /data/geert/bad example1.jpg: [testng] [2025-03-17 18:04:07,003] [pool-1-thread-11] Initializing /data/keith/pg020410saur3.1sc: [testng] [2025-03-17 18:04:08,551] [pool-1-thread-8] Initializing /data/sylvain/2009-10-26 14hr 56min: [testng] [2025-03-17 18:04:09,972] [pool-1-thread-1] Initializing /data/keith/test2.1sc: [testng] [2025-03-17 18:04:11,355] [pool-1-thread-5] Initializing /data/geert/good example1.1sc: [testng] [2025-03-17 18:04:12,764] [pool-1-thread-2] Initializing /data/keith/PF020328saur v3.1sc: [testng] [2025-03-17 18:04:14,100] [pool-1-thread-6] Initializing /data/sylvain/2009-10-26 14hr 56min.tif: [testng] [2025-03-17 18:04:18,333] [pool-1-thread-4] Initializing /data/keith/test.1sc: [testng] [2025-03-17 18:04:19,442] [pool-1-thread-3] Initializing /data/qa-29469/bad3.1sc: [testng] [2025-03-17 18:04:20,821] [pool-1-thread-10] Initializing /data/adrian/test_img.1sc: [testng] [2025-03-17 18:04:29,559] [pool-1-thread-11] Initializing /data/sylvain/2009-10-23 12hr 19min.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1696, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 3 minutes 16 seconds Finished: SUCCESS