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Started by upstream project "BIOFORMATS-test-repo" build number 382 originally caused by: Started by upstream project "Trigger" build number 404 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins3169717386462876151.sh + '[' targa = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_60430_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 02:56:21,324 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 02:56:21,326 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service. [testng] 02:56:21,326 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:56:21,327 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:56:21,327 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:56:21,328 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:56:21,328 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:56:21,328 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:56:21,328 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:56:21,329 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:56:21,329 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:56:21,329 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:56:21,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:56:21,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:56:21,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:56:21,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:56:21,523 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:56:21,524 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:56:21,524 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:56:21,524 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:56:21,525 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration. [testng] 02:56:21,525 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point [testng] 02:56:21,525 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 197 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-18 02:56:21,534] [main] java.version = 11.0.16 [testng] 02:56:21,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:56:21,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:56:21,578 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-18_02-56-21.log] [testng] 02:56:21,580 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration. [testng] [2025-03-18 02:56:21,582] [main] testng.directory = /data [testng] [2025-03-18 02:56:21,582] [main] testng.configDirectory = /config [testng] [2025-03-18 02:56:21,592] [main] testng.multiplier = 1.0 [testng] [2025-03-18 02:56:21,593] [main] testng.in-memory = false [testng] [2025-03-18 02:56:21,593] [main] testng.allow-missing = false [testng] [2025-03-18 02:56:21,593] [main] user.language = en [testng] [2025-03-18 02:56:21,593] [main] user.country = ${user.country} [testng] [2025-03-18 02:56:21,593] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-18 02:56:22,066] [main] ---------------------------------------- [testng] [2025-03-18 02:56:22,066] [main] Total files: 21 [testng] [2025-03-18 02:56:22,066] [main] Scan time: 0.473 s (22 ms/file) [testng] [2025-03-18 02:56:22,066] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-18 02:57:21,438] [pool-1-thread-1] Initializing /data/samples/XING_B24.TGA: [testng] 02:57:21,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:57:21,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:57:21,440 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-18_02-57-21.log] [testng] 02:57:21,441 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38c27a33 - End of configuration. [testng] [2025-03-18 02:57:35,478] [pool-1-thread-12] Initializing /data/samples/XING_T24.TGA: [testng] 02:57:35,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:57:35,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:57:35,480 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-18_02-57-35.log] [testng] 02:57:35,480 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2af77d17 - End of configuration. [testng] [2025-03-18 02:57:45,094] [pool-1-thread-11] Initializing /data/samples/XING_B32.TGA: [testng] 02:57:45,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:57:45,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:57:45,095 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-18_02-57-45.log] [testng] 02:57:45,095 |-INFO in ch.qos.logback.core.sift.SiftProcessor@140afb20 - End of configuration. [testng] [2025-03-18 02:57:46,799] [pool-1-thread-10] Initializing /data/samples/FLAG_B32.TGA: [testng] 02:57:46,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:57:46,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:57:46,800 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-18_02-57-46.log] [testng] 02:57:46,800 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10ec7b60 - End of configuration. [testng] [2025-03-18 02:57:56,013] [pool-1-thread-9] Initializing /data/samples/FLAG_B16.TGA: [testng] 02:57:56,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:57:56,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:57:56,015 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-18_02-57-56.log] [testng] 02:57:56,015 |-INFO in ch.qos.logback.core.sift.SiftProcessor@377eca4b - End of configuration. [testng] [2025-03-18 02:58:06,808] [pool-1-thread-8] Initializing /data/samples/UCM8.TGA: [testng] 02:58:06,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:58:06,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:58:06,809 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-18_02-58-06.log] [testng] 02:58:06,809 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cb587e3 - End of configuration. [testng] [2025-03-18 02:58:09,176] [pool-1-thread-7] Initializing /data/samples/XING_T32.TGA: [testng] 02:58:09,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:58:09,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:58:09,177 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-18_02-58-09.log] [testng] 02:58:09,178 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42eb2c30 - End of configuration. [testng] [2025-03-18 02:58:10,621] [pool-1-thread-6] Initializing /data/samples/UTC16.TGA: [testng] 02:58:10,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:58:10,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:58:10,622 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-18_02-58-10.log] [testng] 02:58:10,622 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fa7e76f - End of configuration. [testng] [2025-03-18 02:58:14,332] [pool-1-thread-5] Initializing /data/samples/FLAG_T32.TGA: [testng] 02:58:14,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:58:14,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:58:14,333 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-18_02-58-14.log] [testng] 02:58:14,333 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62a54eee - End of configuration. [testng] [2025-03-18 02:58:17,575] [pool-1-thread-4] Initializing /data/samples/CTC24.TGA: [testng] 02:58:17,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:58:17,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:58:17,576 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-18_02-58-17.log] [testng] 02:58:17,576 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a925886 - End of configuration. [testng] [2025-03-18 02:58:25,568] [pool-1-thread-3] Initializing /data/samples/UTC32.TGA: [testng] 02:58:25,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:58:25,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:58:25,569 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-18_02-58-25.log] [testng] 02:58:25,569 |-INFO in ch.qos.logback.core.sift.SiftProcessor@192f7cfe - End of configuration. [testng] [2025-03-18 02:58:37,615] [pool-1-thread-2] Initializing /data/samples/UTC24.TGA: [testng] 02:58:37,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:58:37,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:58:37,616 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-18_02-58-37.log] [testng] 02:58:37,616 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5dcbb3c9 - End of configuration. [testng] [2025-03-18 03:00:18,843] [pool-1-thread-5] Initializing /data/samples/FLAG_B24.TGA: [testng] [2025-03-18 03:00:22,685] [pool-1-thread-12] Initializing /data/samples/MARBLES.TGA: [testng] [2025-03-18 03:00:27,406] [pool-1-thread-9] Initializing /data/samples/XING_T16.TGA: [testng] [2025-03-18 03:00:32,618] [pool-1-thread-7] Initializing /data/samples/FLAG_T16.TGA: [testng] [2025-03-18 03:00:37,104] [pool-1-thread-8] Initializing /data/samples/UBW8.TGA: [testng] [2025-03-18 03:00:40,390] [pool-1-thread-6] Initializing /data/samples/CTC16.TGA: [testng] [2025-03-18 03:00:43,783] [pool-1-thread-2] Initializing /data/samples/CCM8.TGA: [testng] [2025-03-18 03:00:49,812] [pool-1-thread-4] Initializing /data/samples/CBW8.TGA: [testng] [2025-03-18 03:00:55,134] [pool-1-thread-3] Initializing /data/samples/XING_B16.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 5 minutes 22 seconds Finished: SUCCESS