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Started by upstream project "BIOFORMATS-test-repo" build number 382 originally caused by: Started by upstream project "Trigger" build number 404 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins17630919759882669611.sh + '[' gatan-dm2 = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_60459_merge_ci -v /uod/idr/repos/curated/gatan-dm2:/data -v /uod/idr-scratch/merge-ci/curated/gatan-dm2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 06:26:57,188 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 06:26:57,189 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service. [testng] 06:26:57,189 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:26:57,190 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:26:57,191 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 06:26:57,191 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 06:26:57,191 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 06:26:57,191 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:26:57,192 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:26:57,193 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 06:26:57,193 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 06:26:57,193 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 06:26:57,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 06:26:57,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 06:26:57,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 06:26:57,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 06:26:57,387 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 06:26:57,387 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 06:26:57,387 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 06:26:57,387 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 06:26:57,388 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration. [testng] 06:26:57,388 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point [testng] 06:26:57,388 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 196 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-18 06:26:57,397] [main] java.version = 11.0.16 [testng] 06:26:57,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:26:57,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:26:57,442 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-18_06-26-57.log] [testng] 06:26:57,444 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration. [testng] [2025-03-18 06:26:57,446] [main] testng.directory = /data [testng] [2025-03-18 06:26:57,446] [main] testng.configDirectory = /config [testng] [2025-03-18 06:26:57,456] [main] testng.multiplier = 1.0 [testng] [2025-03-18 06:26:57,457] [main] testng.in-memory = false [testng] [2025-03-18 06:26:57,457] [main] testng.allow-missing = false [testng] [2025-03-18 06:26:57,457] [main] user.language = en [testng] [2025-03-18 06:26:57,457] [main] user.country = ${user.country} [testng] [2025-03-18 06:26:57,457] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-18 06:27:35,120] [main] ---------------------------------------- [testng] [2025-03-18 06:27:35,120] [main] Total files: 25 [testng] [2025-03-18 06:27:35,120] [main] Scan time: 37.663 s (1506 ms/file) [testng] [2025-03-18 06:27:35,121] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-18 06:28:42,113] [pool-1-thread-1] Initializing /data/imagic/not read correctly/Abeta Moon.dm2: [testng] 06:28:42,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 06:28:42,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:28:42,116 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-18_06-28-42.log] [testng] 06:28:42,116 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30a149e - End of configuration. [testng] [2025-03-18 06:28:44,027] [pool-1-thread-12] Initializing /data/imagic/not read correctly/Abeta Moon_preview.png: [testng] 06:28:44,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 06:28:44,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:28:44,029 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-18_06-28-44.log] [testng] 06:28:44,030 |-INFO in ch.qos.logback.core.sift.SiftProcessor@637e20ab - End of configuration. [testng] [2025-03-18 06:28:44,492] [pool-1-thread-11] Initializing /data/imagic/not read correctly/Zucchini.dm2: [testng] 06:28:44,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 06:28:44,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:28:44,493 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-18_06-28-44.log] [testng] 06:28:44,493 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f64f629 - End of configuration. [testng] [2025-03-18 06:28:48,090] [pool-1-thread-10] Initializing /data/imagic/13008.dm2: [testng] 06:28:48,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 06:28:48,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:28:48,091 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-18_06-28-48.log] [testng] 06:28:48,092 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26a179ad - End of configuration. [testng] [2025-03-18 06:28:49,604] [pool-1-thread-9] Initializing /data/pang/screen capture of metadata/tem_dm_general_info.png: [testng] 06:28:49,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 06:28:49,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:28:49,605 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-18_06-28-49.log] [testng] 06:28:49,605 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4deeebac - End of configuration. [testng] [2025-03-18 06:28:50,133] [pool-1-thread-8] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info2.png: [testng] 06:28:50,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 06:28:50,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:28:50,134 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-18_06-28-50.log] [testng] 06:28:50,134 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3723c2b4 - End of configuration. [testng] [2025-03-18 06:28:50,761] [pool-1-thread-7] Initializing /data/pang/screen capture of metadata/tem_dm_keywords_info.png: [testng] 06:28:50,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 06:28:50,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:28:50,761 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-18_06-28-50.log] [testng] 06:28:50,762 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3265e8c6 - End of configuration. [testng] [2025-03-18 06:28:51,250] [pool-1-thread-6] Initializing /data/pang/signed: [testng] 06:28:51,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 06:28:51,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:28:51,251 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-18_06-28-51.log] [testng] 06:28:51,252 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62449036 - End of configuration. [testng] [2025-03-18 06:28:56,573] [pool-1-thread-5] Initializing /data/pang/screen capture of metadata/tem_dm_microscope_info.png: [testng] 06:28:56,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 06:28:56,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:28:56,574 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-18_06-28-56.log] [testng] 06:28:56,575 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b2f44a4 - End of configuration. [testng] [2025-03-18 06:28:57,161] [pool-1-thread-4] Initializing /data/imagic/Histiocyte in Skin Dermis.dm2: [testng] 06:28:57,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 06:28:57,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:28:57,162 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-18_06-28-57.log] [testng] 06:28:57,162 |-INFO in ch.qos.logback.core.sift.SiftProcessor@285059ab - End of configuration. [testng] [2025-03-18 06:29:00,429] [pool-1-thread-3] Initializing /data/pang/10500x-o4: [testng] 06:29:00,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 06:29:00,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:29:00,430 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-18_06-29-00.log] [testng] 06:29:00,431 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58a9cd8e - End of configuration. [testng] [2025-03-18 06:29:02,735] [pool-1-thread-2] Initializing /data/imagic/TEM 10118.dm2: [testng] 06:29:02,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:29:02,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:29:02,736 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-18_06-29-02.log] [testng] 06:29:02,737 |-INFO in ch.qos.logback.core.sift.SiftProcessor@528347c3 - End of configuration. [testng] [2025-03-18 06:29:08,474] [pool-1-thread-12] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info1.png: [testng] [2025-03-18 06:29:08,606] [pool-1-thread-9] Initializing /data/imagic/not read correctly/Zucchini_preview.png: [testng] [2025-03-18 06:29:08,717] [pool-1-thread-5] Initializing /data/pang/grating025k.dm2: [testng] [2025-03-18 06:29:09,339] [pool-1-thread-7] Initializing /data/pang/unproc-auto: [testng] [2025-03-18 06:29:10,014] [pool-1-thread-8] Initializing /data/imagic/1-1.dm2: [testng] [2025-03-18 06:29:12,663] [pool-1-thread-1] Initializing /data/pang/DLMeD2E1_010500x03.dm2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 28 seconds Finished: SUCCESS