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Started by upstream project "BIOFORMATS-test-repo" build number 382 originally caused by: Started by upstream project "Trigger" build number 404 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins11051626330037315167.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_60477_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 08:24:44,619 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 08:24:44,620 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service. [testng] 08:24:44,620 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:24:44,621 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:24:44,622 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 08:24:44,622 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 08:24:44,622 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 08:24:44,622 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:24:44,623 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:24:44,624 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 08:24:44,624 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 08:24:44,624 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 08:24:44,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:24:44,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:24:44,826 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:24:44,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:24:44,832 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:24:44,832 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:24:44,832 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:24:44,833 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:24:44,833 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration. [testng] 08:24:44,834 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point [testng] 08:24:44,834 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 211 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-18 08:24:44,843] [main] java.version = 11.0.16 [testng] 08:24:44,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:24:44,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:24:44,893 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-18_08-24-44.log] [testng] 08:24:44,895 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration. [testng] [2025-03-18 08:24:44,897] [main] testng.directory = /data [testng] [2025-03-18 08:24:44,897] [main] testng.configDirectory = /config [testng] [2025-03-18 08:24:44,908] [main] testng.multiplier = 1.0 [testng] [2025-03-18 08:24:44,910] [main] testng.in-memory = false [testng] [2025-03-18 08:24:44,910] [main] testng.allow-missing = false [testng] [2025-03-18 08:24:44,910] [main] user.language = en [testng] [2025-03-18 08:24:44,910] [main] user.country = ${user.country} [testng] [2025-03-18 08:24:44,910] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-18 09:33:13,680] [main] ---------------------------------------- [testng] [2025-03-18 09:33:13,680] [main] Total files: 14121 [testng] [2025-03-18 09:33:13,681] [main] Scan time: 4108.77 s (290 ms/file) [testng] [2025-03-18 09:33:13,681] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 261 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-18 10:29:47,855] [pool-1-thread-1] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_Vec_ISOtoDA_4well/Dish6_w1FRET_s1_t1.TIF: [testng] 10:29:47,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 10:29:47,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:29:47,858 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-18_10-29-47.log] [testng] 10:29:47,858 |-INFO in ch.qos.logback.core.sift.SiftProcessor@778f22d5 - End of configuration. [testng] [2025-03-18 10:30:33,877] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] 10:30:33,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 10:30:33,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:30:33,878 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-18_10-30-33.log] [testng] 10:30:33,878 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3feb2d45 - End of configuration. [testng] [2025-03-18 10:30:38,974] [pool-1-thread-11] Initializing /data/josh/2101to600b.stk: [testng] 10:30:38,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 10:30:38,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:30:38,975 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-18_10-30-38.log] [testng] 10:30:38,976 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d3e2fc5 - End of configuration. [testng] [2025-03-18 10:31:18,335] [pool-1-thread-10] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] 10:31:18,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 10:31:18,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:31:18,337 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-18_10-31-18.log] [testng] 10:31:18,337 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45b0dbc9 - End of configuration. [testng] [2025-03-18 10:31:27,820] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] 10:31:27,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 10:31:27,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:31:27,821 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-18_10-31-27.log] [testng] 10:31:27,821 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36485124 - End of configuration. [testng] [2025-03-18 10:31:46,477] [pool-1-thread-8] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] 10:31:46,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 10:31:46,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:31:46,478 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-18_10-31-46.log] [testng] 10:31:46,478 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d9d65fd - End of configuration. [testng] [2025-03-18 10:31:52,278] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] 10:31:52,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 10:31:52,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:31:52,279 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-18_10-31-52.log] [testng] 10:31:52,280 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ef86736 - End of configuration. [testng] [2025-03-18 10:32:00,234] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] 10:32:00,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 10:32:00,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:32:00,235 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-18_10-32-00.log] [testng] 10:32:00,235 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ca17464 - End of configuration. [testng] [2025-03-18 10:32:11,570] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] 10:32:11,570 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 10:32:11,570 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:32:11,570 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-18_10-32-11.log] [testng] 10:32:11,571 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6329a06b - End of configuration. [testng] [2025-03-18 10:32:20,786] [pool-1-thread-5] Used files list does not include base file [testng] [2025-03-18 10:32:20,789] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] 10:32:20,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 10:32:20,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:32:20,790 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-18_10-32-20.log] [testng] 10:32:20,791 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ce36665 - End of configuration. [testng] [2025-03-18 10:32:26,054] [pool-1-thread-4] Used files list does not include base file [testng] [2025-03-18 10:32:26,058] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] 10:32:26,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 10:32:26,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:32:26,058 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-18_10-32-26.log] [testng] 10:32:26,059 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2836193b - End of configuration. [testng] [2025-03-18 10:32:29,629] [pool-1-thread-3] Used files list does not include base file [testng] [2025-03-18 10:32:29,632] [pool-1-thread-2] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] 10:32:29,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 10:32:29,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:32:29,632 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-18_10-32-29.log] [testng] 10:32:29,633 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79bc4d29 - End of configuration. [testng] [2025-03-18 10:33:10,050] [pool-1-thread-2] Initializing /data/samples/zserEight.stk: [testng] [2025-03-18 10:33:22,378] [pool-1-thread-10] Initializing /data/ascb/golgi marker.tif: [testng] [2025-03-18 10:33:55,814] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2025-03-18 10:34:03,308] [pool-1-thread-8] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2025-03-18 10:34:09,230] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2025-03-18 10:34:16,803] [pool-1-thread-3] Used files list does not include base file [testng] [2025-03-18 10:34:19,983] [pool-1-thread-10] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2025-03-18 10:34:38,737] [pool-1-thread-12] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211111_HTR5_ISOto5HT_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-03-18 10:34:51,222] [pool-1-thread-7] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2025-03-18 10:35:10,824] [pool-1-thread-2] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD3_ISOtoDA_4well/Dish3_w1FRET_s1_t1.TIF: [testng] [2025-03-18 10:36:08,785] [pool-1-thread-10] Initializing /data/grant/X.STK: [testng] [2025-03-18 10:36:25,426] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2025-03-18 10:36:33,438] [pool-1-thread-9] Used files list does not include base file [testng] [2025-03-18 10:36:33,530] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2025-03-18 10:37:00,102] [pool-1-thread-8] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2025-03-18 10:37:13,048] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2025-03-18 10:37:23,828] [pool-1-thread-10] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211115_HTR5_ISOto5HT_35mmdish/5HT/Dish1_w1FRET_t1.TIF: [testng] [2025-03-18 10:38:09,364] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2025-03-18 10:38:33,177] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2025-03-18 10:38:42,453] [pool-1-thread-4] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2025-03-18 10:40:05,698] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2025-03-18 10:40:11,286] [pool-1-thread-11] Used files list does not include base file [testng] [2025-03-18 10:40:36,038] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2025-03-18 10:40:40,539] [pool-1-thread-3] Used files list does not include base file [testng] [2025-03-18 10:40:49,909] [pool-1-thread-7] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2025-03-18 10:40:55,499] [pool-1-thread-5] Initializing /data/samples/zserSixteen.stk: [testng] [2025-03-18 10:41:05,708] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2025-03-18 10:41:21,916] [pool-1-thread-8] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2025-03-18 10:41:33,100] [pool-1-thread-11] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD3_ISOtoDA_4well/Dish9_w1FRET_s1_t1.TIF: [testng] [2025-03-18 10:42:24,659] [pool-1-thread-5] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2025-03-18 10:43:38,137] [pool-1-thread-7] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1E_ISOto5HT_35mm/Dish1_w1FRET_t1.TIF: [testng] [2025-03-18 10:44:06,394] [pool-1-thread-9] Initializing 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[2025-03-18 10:56:49,582] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2025-03-18 10:57:27,928] [pool-1-thread-8] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2025-03-18 10:58:41,308] [pool-1-thread-8] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2025-03-18 10:59:08,738] [pool-1-thread-8] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2025-03-18 10:59:27,215] [pool-1-thread-8] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211115_Vec_ISOto5HT_35mmdish/HCl/Dish2_w1FRET_t1.TIF: [testng] [2025-03-18 11:01:23,503] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2025-03-18 11:01:27,456] [pool-1-thread-6] Used files list does not include base file [testng] [2025-03-18 11:03:04,256] [pool-1-thread-12] Initializing /data/david/tl4.tif: [testng] [2025-03-18 11:03:28,435] [pool-1-thread-12] Initializing 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[pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2025-03-18 11:14:29,995] [pool-1-thread-3] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2025-03-18 11:14:54,630] [pool-1-thread-3] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2025-03-18 11:16:33,006] [pool-1-thread-8] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2025-03-18 11:16:49,617] [pool-1-thread-8] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2025-03-18 11:17:51,483] [pool-1-thread-8] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2025-03-18 11:18:16,403] [pool-1-thread-8] Initializing /data/josh/2101to600e.stk: [testng] [2025-03-18 11:19:47,293] [pool-1-thread-3] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_HTR1D_ISOto5HT_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-03-18 11:20:33,058] [pool-1-thread-8] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2025-03-18 11:20:57,880] [pool-1-thread-8] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2025-03-18 11:21:18,743] [pool-1-thread-8] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211111_Vec_ISOto5HT_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-03-18 11:34:11,154] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2025-03-18 11:34:22,877] [pool-1-thread-9] Initializing /data/heiko/sample_2x2.stk: [testng] [2025-03-18 11:34:44,472] [pool-1-thread-9] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD4_ISOtoDA_4well/Dish4_w1FRET_s1_t1.TIF: [testng] [2025-03-18 11:35:51,243] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2025-03-18 11:35:55,567] [pool-1-thread-3] Used files list does not include base file [testng] [2025-03-18 11:36:41,057] [pool-1-thread-3] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2025-03-18 11:37:03,060] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2025-03-18 11:37:12,951] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2025-03-18 11:37:27,327] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2025-03-18 11:37:46,348] [pool-1-thread-8] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2025-03-18 11:38:07,742] [pool-1-thread-3] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2025-03-18 11:38:31,421] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2025-03-18 11:38:54,991] [pool-1-thread-3] Initializing 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[pool-1-thread-8] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2025-03-18 11:55:23,232] [pool-1-thread-8] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2025-03-18 11:56:58,763] [pool-1-thread-2] Initializing /data/qa-16915/m-04.tif: [testng] [2025-03-18 11:57:07,012] [pool-1-thread-8] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1F_ISOto5HT_35mm/Dish2_w1FRET_t1.TIF: [testng] [2025-03-18 11:57:33,671] [pool-1-thread-2] Initializing /data/cumol-test-series/23.001: [testng] [2025-03-18 11:59:26,728] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2025-03-18 11:59:31,470] [pool-1-thread-2] Used files list does not include base file [testng] [2025-03-18 12:00:32,505] [pool-1-thread-11] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1E_ISOto5HT_35mm/Dish2_w1FRET_t1.TIF: [testng] [2025-03-18 12:01:02,195] [pool-1-thread-3] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2025-03-18 12:01:49,901] [pool-1-thread-3] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2025-03-18 12:01:59,067] [pool-1-thread-2] Initializing /data/josh/2101to600astk.stk: [testng] [2025-03-18 12:03:21,145] [pool-1-thread-3] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2025-03-18 12:04:23,898] [pool-1-thread-3] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2025-03-18 12:05:25,465] [pool-1-thread-3] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2025-03-18 12:06:43,631] [pool-1-thread-3] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1F_ISOto5HT_35mm/Dish1_w1FRET_t1.TIF: [testng] [2025-03-18 12:13:06,813] [pool-1-thread-2] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2025-03-18 12:13:41,658] [pool-1-thread-2] Initializing /data/qa-16915/m-01.tif: [testng] [2025-03-18 12:14:07,086] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2025-03-18 12:14:12,936] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2025-03-18 12:14:28,008] [pool-1-thread-8] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2025-03-18 12:14:47,390] [pool-1-thread-10] Initializing /data/dave/Z Series.stk: [testng] [2025-03-18 12:14:51,116] [pool-1-thread-2] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2025-03-18 12:15:00,329] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2025-03-18 12:15:13,828] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2025-03-18 12:15:17,576] [pool-1-thread-10] Used files list does not include base file [testng] [2025-03-18 12:15:19,618] [pool-1-thread-2] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211115_Vec_ISOto5HT_35mmdish/5HT/Dish1_w1FRET_t1.TIF: [testng] [2025-03-18 12:15:35,176] [pool-1-thread-6] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_Vec_ISOto5HT_35mm/Dish1_w1FRET_t1.TIF: [testng] [2025-03-18 12:15:46,674] [pool-1-thread-8] Initializing /data/samples/zseries.stk: [testng] [2025-03-18 12:16:08,377] [pool-1-thread-8] Initializing /data/qa-16915/m-04-488.tif: [testng] [2025-03-18 12:16:11,990] [pool-1-thread-10] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2025-03-18 12:16:31,951] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2025-03-18 12:17:13,074] [pool-1-thread-10] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2025-03-18 12:17:31,099] [pool-1-thread-11] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2025-03-18 12:17:36,979] [pool-1-thread-10] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2025-03-18 12:17:57,367] [pool-1-thread-10] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2025-03-18 12:18:13,108] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2025-03-18 12:18:18,212] [pool-1-thread-8] Used files list does not include base file [testng] [2025-03-18 12:18:24,288] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2025-03-18 12:18:29,122] [pool-1-thread-10] Used files list does not include base file [testng] [2025-03-18 12:18:31,501] [pool-1-thread-11] Initializing /data/ascb/C1 Stack.stk: [testng] [2025-03-18 12:18:54,414] [pool-1-thread-11] Initializing /data/josh/2101to800.stk: [testng] [2025-03-18 12:20:00,351] [pool-1-thread-12] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_Vec_ISOto5HT_35mmdish/Dish3_w1FRET_t1.TIF: [testng] [2025-03-18 12:20:10,040] [pool-1-thread-10] Initializing /data/chris/Stream-2(partial).stk: [testng] [2025-03-18 12:20:58,493] [pool-1-thread-8] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2025-03-18 12:21:14,663] [pool-1-thread-1] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211202_HTR1E_ISOto5HT_4well/Dish3_w1FRET_s1_t1.TIF: [testng] [2025-03-18 12:21:38,738] [pool-1-thread-10] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: Build was aborted Calling Pipeline was cancelled Finished: ABORTED