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Started by upstream project "BIOFORMATS-test-repo" build number 382 originally caused by: Started by upstream project "Trigger" build number 404 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins8089512226043231256.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_60481_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 08:56:21,200 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 08:56:21,202 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service. [testng] 08:56:21,202 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:56:21,203 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:56:21,203 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 08:56:21,204 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 08:56:21,204 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 08:56:21,204 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:56:21,205 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:56:21,205 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 08:56:21,206 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 08:56:21,206 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 08:56:21,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:56:21,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:56:21,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:56:21,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:56:21,461 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:56:21,461 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:56:21,461 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:56:21,462 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:56:21,462 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration. [testng] 08:56:21,462 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point [testng] 08:56:21,463 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 258 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-18 08:56:21,472] [main] java.version = 11.0.16 [testng] 08:56:21,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:56:21,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:56:21,520 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-18_08-56-21.log] [testng] 08:56:21,522 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration. [testng] [2025-03-18 08:56:21,524] [main] testng.directory = /data [testng] [2025-03-18 08:56:21,524] [main] testng.configDirectory = /config [testng] [2025-03-18 08:56:21,535] [main] testng.multiplier = 1.0 [testng] [2025-03-18 08:56:21,536] [main] testng.in-memory = false [testng] [2025-03-18 08:56:21,536] [main] testng.allow-missing = false [testng] [2025-03-18 08:56:21,536] [main] user.language = en [testng] [2025-03-18 08:56:21,536] [main] user.country = ${user.country} [testng] [2025-03-18 08:56:21,537] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-18 09:22:45,585] [main] ---------------------------------------- [testng] [2025-03-18 09:22:45,585] [main] Total files: 268 [testng] [2025-03-18 09:22:45,585] [main] Scan time: 1584.048 s (5910 ms/file) [testng] [2025-03-18 09:22:45,585] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-18 09:39:28,795] [pool-1-thread-1] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] 09:39:28,795 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:39:28,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:39:28,798 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-18_09-39-28.log] [testng] 09:39:28,798 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a353b2e - End of configuration. [testng] [2025-03-18 09:39:31,076] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] 09:39:31,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 09:39:31,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:39:31,077 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-18_09-39-31.log] [testng] 09:39:31,077 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f9cd18 - End of configuration. [testng] [2025-03-18 09:39:32,269] [pool-1-thread-11] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] 09:39:32,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 09:39:32,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:39:32,270 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-18_09-39-32.log] [testng] 09:39:32,271 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b6cb122 - End of configuration. [testng] [2025-03-18 09:39:33,324] [pool-1-thread-10] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] 09:39:33,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 09:39:33,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:39:33,324 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-18_09-39-33.log] [testng] 09:39:33,325 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4daf266f - End of configuration. [testng] [2025-03-18 09:39:34,949] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] 09:39:34,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 09:39:34,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:39:34,950 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-18_09-39-34.log] [testng] 09:39:34,950 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c74be94 - End of configuration. [testng] [2025-03-18 09:39:36,139] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] 09:39:36,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 09:39:36,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:39:36,140 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-18_09-39-36.log] [testng] 09:39:36,141 |-INFO in ch.qos.logback.core.sift.SiftProcessor@545e4905 - End of configuration. [testng] [2025-03-18 09:39:37,420] [pool-1-thread-7] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] 09:39:37,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 09:39:37,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:39:37,421 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-18_09-39-37.log] [testng] 09:39:37,421 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14008e9e - End of configuration. [testng] [2025-03-18 09:39:42,203] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] 09:39:42,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 09:39:42,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:39:42,204 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-18_09-39-42.log] [testng] 09:39:42,205 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cf3c66f - End of configuration. [testng] [2025-03-18 09:39:43,799] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] 09:39:43,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 09:39:43,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:39:43,800 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-18_09-39-43.log] [testng] 09:39:43,800 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53182484 - End of configuration. [testng] [2025-03-18 09:39:45,266] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] 09:39:45,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:39:45,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:39:45,267 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-18_09-39-45.log] [testng] 09:39:45,267 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14d88f36 - End of configuration. [testng] [2025-03-18 09:39:46,019] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] 09:39:46,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 09:39:46,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:39:46,020 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-18_09-39-46.log] [testng] 09:39:46,020 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f0a70a - End of configuration. [testng] [2025-03-18 09:39:47,944] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] 09:39:47,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:39:47,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:39:47,945 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-18_09-39-47.log] [testng] 09:39:47,945 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ebd0634 - End of configuration. [testng] [2025-03-18 09:40:02,196] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2025-03-18 09:40:04,425] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2025-03-18 09:40:06,932] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2025-03-18 09:40:09,458] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2025-03-18 09:40:10,440] [pool-1-thread-6] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2025-03-18 09:40:11,261] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2025-03-18 09:40:12,046] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] [2025-03-18 09:40:15,307] [pool-1-thread-1] Initializing /data/steve/TIFF/HAFF SEM: [testng] [2025-03-18 09:40:23,631] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2025-03-18 09:40:28,714] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2025-03-18 09:40:34,656] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2025-03-18 09:40:36,314] [pool-1-thread-6] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2025-03-18 09:40:40,626] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2025-03-18 09:40:41,731] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2025-03-18 09:40:42,897] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2025-03-18 09:40:44,498] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2025-03-18 09:40:46,342] [pool-1-thread-11] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2025-03-18 09:40:54,658] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2025-03-18 09:40:59,286] [pool-1-thread-8] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2025-03-18 09:41:05,407] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2025-03-18 09:41:06,432] [pool-1-thread-7] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2025-03-18 09:41:10,805] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2025-03-18 09:41:12,776] [pool-1-thread-2] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2025-03-18 09:41:15,780] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2025-03-18 09:41:21,922] [pool-1-thread-5] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2025-03-18 09:41:28,320] [pool-1-thread-11] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2025-03-18 09:41:33,418] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] [2025-03-18 09:41:36,616] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2025-03-18 09:41:38,611] [pool-1-thread-3] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2025-03-18 09:41:44,419] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2025-03-18 09:41:47,492] [pool-1-thread-2] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2025-03-18 09:41:48,038] [pool-1-thread-1] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2025-03-18 09:41:55,911] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2025-03-18 09:42:01,403] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2025-03-18 09:42:04,020] [pool-1-thread-4] Initializing /data/steve/FITS/M51.fits: [testng] [2025-03-18 09:42:04,532] [pool-1-thread-9] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2025-03-18 09:42:10,250] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2025-03-18 09:42:12,008] [pool-1-thread-7] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2025-03-18 09:42:19,052] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2025-03-18 09:42:19,907] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2025-03-18 09:42:21,571] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2025-03-18 09:42:23,633] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2025-03-18 09:42:28,576] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] [2025-03-18 09:42:31,114] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2025-03-18 09:42:32,753] [pool-1-thread-3] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2025-03-18 09:42:34,424] [pool-1-thread-8] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2025-03-18 09:42:36,046] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2025-03-18 09:42:39,837] [pool-1-thread-10] Initializing /data/steve/FITS/M13.fits: [testng] [2025-03-18 09:42:40,269] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2025-03-18 09:42:41,784] [pool-1-thread-6] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2025-03-18 09:42:45,335] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2025-03-18 09:42:47,497] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2025-03-18 09:42:50,275] [pool-1-thread-11] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2025-03-18 09:42:53,012] [pool-1-thread-3] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2025-03-18 09:42:59,806] [pool-1-thread-7] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2025-03-18 09:43:01,642] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2025-03-18 09:43:03,207] [pool-1-thread-2] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] [2025-03-18 09:43:04,369] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2025-03-18 09:43:08,841] [pool-1-thread-1] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2025-03-18 09:43:09,941] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2025-03-18 09:43:11,217] [pool-1-thread-6] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2025-03-18 09:43:18,546] [pool-1-thread-10] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2025-03-18 09:43:27,615] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2025-03-18 09:43:28,630] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2025-03-18 09:43:30,987] [pool-1-thread-11] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2025-03-18 09:43:32,377] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2025-03-18 09:43:34,013] [pool-1-thread-9] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2025-03-18 09:43:39,967] [pool-1-thread-7] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2025-03-18 09:43:45,304] [pool-1-thread-2] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2025-03-18 09:43:47,532] [pool-1-thread-4] Initializing /data/steve/FITS/M104.fits: [testng] [2025-03-18 09:43:47,965] [pool-1-thread-6] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2025-03-18 09:43:50,167] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2025-03-18 09:43:58,376] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2025-03-18 09:44:02,067] [pool-1-thread-1] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2025-03-18 09:44:05,631] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2025-03-18 09:44:08,529] [pool-1-thread-5] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2025-03-18 09:44:09,036] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2025-03-18 09:44:10,097] [pool-1-thread-8] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2025-03-18 09:44:13,951] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2025-03-18 09:44:22,489] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2025-03-18 09:44:24,563] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2025-03-18 09:44:29,950] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2025-03-18 09:44:32,236] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2025-03-18 09:44:36,380] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2025-03-18 09:44:39,287] [pool-1-thread-9] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2025-03-18 09:44:43,788] [pool-1-thread-7] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2025-03-18 09:44:45,093] [pool-1-thread-6] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2025-03-18 09:44:46,284] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2025-03-18 09:44:47,850] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2025-03-18 09:44:48,883] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2025-03-18 09:44:52,273] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2025-03-18 09:44:54,703] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2025-03-18 09:44:59,180] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2025-03-18 09:45:00,503] [pool-1-thread-7] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2025-03-18 09:45:04,889] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2025-03-18 09:45:05,686] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] [2025-03-18 09:45:09,798] [pool-1-thread-5] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2025-03-18 09:45:11,075] [pool-1-thread-2] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2025-03-18 09:45:12,201] [pool-1-thread-8] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] [2025-03-18 09:45:13,685] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2025-03-18 09:45:15,047] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2025-03-18 09:45:17,155] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2025-03-18 09:45:21,300] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] [2025-03-18 09:45:22,848] [pool-1-thread-11] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2025-03-18 09:45:25,518] [pool-1-thread-6] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2025-03-18 09:45:27,190] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2025-03-18 09:45:28,761] [pool-1-thread-9] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2025-03-18 09:45:33,220] [pool-1-thread-2] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] [2025-03-18 09:45:37,557] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2025-03-18 09:45:38,440] [pool-1-thread-12] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2025-03-18 09:45:44,212] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2025-03-18 09:45:46,490] [pool-1-thread-5] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2025-03-18 09:45:48,497] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2025-03-18 09:45:50,280] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2025-03-18 09:45:53,171] [pool-1-thread-6] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2025-03-18 09:45:54,724] [pool-1-thread-11] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2025-03-18 09:45:59,270] [pool-1-thread-3] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2025-03-18 09:46:04,015] [pool-1-thread-7] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2025-03-18 09:46:09,880] [pool-1-thread-8] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2025-03-18 09:46:13,438] [pool-1-thread-5] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2025-03-18 09:46:16,033] [pool-1-thread-10] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2025-03-18 09:46:22,182] [pool-1-thread-4] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2025-03-18 09:46:31,603] [pool-1-thread-9] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2025-03-18 09:46:33,666] [pool-1-thread-2] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2025-03-18 09:46:39,270] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2025-03-18 09:46:42,707] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2025-03-18 09:46:44,062] [pool-1-thread-12] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2025-03-18 09:46:46,349] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2025-03-18 09:46:54,970] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2025-03-18 09:46:55,942] [pool-1-thread-7] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2025-03-18 09:46:57,713] [pool-1-thread-9] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2025-03-18 09:47:03,219] [pool-1-thread-3] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2025-03-18 09:47:08,421] [pool-1-thread-6] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2025-03-18 09:47:13,344] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2025-03-18 09:47:17,807] [pool-1-thread-1] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2025-03-18 09:47:20,830] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2025-03-18 09:47:27,392] [pool-1-thread-4] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2025-03-18 09:47:33,383] [pool-1-thread-12] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2025-03-18 09:47:34,817] [pool-1-thread-2] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2025-03-18 09:47:40,472] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2025-03-18 09:47:43,889] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2025-03-18 09:47:47,180] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2025-03-18 09:47:51,745] [pool-1-thread-12] Initializing /data/steve/Targa/Test.TGA: [testng] [2025-03-18 09:47:53,473] [pool-1-thread-2] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2025-03-18 09:47:59,211] [pool-1-thread-8] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2025-03-18 09:48:06,203] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2025-03-18 09:48:07,806] [pool-1-thread-1] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2025-03-18 09:48:11,437] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 52 minutes 18 seconds Finished: SUCCESS