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Started by upstream project "BIOFORMATS-test-repo" build number 383 originally caused by: Started by upstream project "Trigger" build number 405 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins17183298716452236742.sh + '[' jpeg = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_60550_merge_ci -v /uod/idr/repos/curated/jpeg:/data -v /uod/idr-scratch/merge-ci/curated/jpeg:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:49:51,254 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:49:51,256 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 00:49:51,256 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:49:51,256 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:49:51,257 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:49:51,257 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:49:51,257 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:49:51,257 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:49:51,258 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:49:51,258 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:49:51,259 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:49:51,259 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:49:51,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:49:51,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:49:51,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:49:51,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:49:51,439 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:49:51,439 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:49:51,439 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:49:51,440 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:49:51,440 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 00:49:51,440 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 00:49:51,440 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 182 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-19 00:49:51,449] [main] java.version = 17.0.2 [testng] 00:49:51,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:49:51,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:51,492 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-19_00-49-51.log] [testng] 00:49:51,493 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-03-19 00:49:51,495] [main] testng.directory = /data [testng] [2025-03-19 00:49:51,495] [main] testng.configDirectory = /config [testng] [2025-03-19 00:49:51,504] [main] testng.multiplier = 1.0 [testng] [2025-03-19 00:49:51,504] [main] testng.in-memory = false [testng] [2025-03-19 00:49:51,504] [main] testng.allow-missing = false [testng] [2025-03-19 00:49:51,505] [main] user.language = en [testng] [2025-03-19 00:49:51,505] [main] user.country = ${user.country} [testng] [2025-03-19 00:49:51,505] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-19 00:49:52,503] [main] ---------------------------------------- [testng] [2025-03-19 00:49:52,504] [main] Total files: 12 [testng] [2025-03-19 00:49:52,504] [main] Scan time: 0.998 s (83 ms/file) [testng] [2025-03-19 00:49:52,504] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 12 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-19 00:50:11,419] [pool-1-thread-1] Initializing /data/gh-4061/magick2x1.jpg: [testng] 00:50:11,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:50:11,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:11,422 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-19_00-50-11.log] [testng] 00:50:11,422 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b492167 - End of configuration. [testng] [2025-03-19 00:50:12,650] [pool-1-thread-12] Initializing /data/big-images/2kx2k.jpg: [testng] 00:50:12,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:50:12,651 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:12,652 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-19_00-50-12.log] [testng] 00:50:12,652 |-INFO in ch.qos.logback.core.sift.SiftProcessor@650b2f11 - End of configuration. [testng] [2025-03-19 00:50:12,940] [pool-1-thread-11] Initializing /data/big-images/8kx8k.jpg: [testng] 00:50:12,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:50:12,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:12,942 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-19_00-50-12.log] [testng] 00:50:12,942 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8224730 - End of configuration. [testng] [2025-03-19 00:50:15,162] [pool-1-thread-10] Initializing /data/big-images/4kx4k.jpg: [testng] 00:50:15,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:50:15,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:15,163 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-19_00-50-15.log] [testng] 00:50:15,163 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e3129f8 - End of configuration. [testng] [2025-03-19 00:50:15,853] [pool-1-thread-9] Initializing /data/samples/d170 170C +GAL-2006-0006_c6.JPG: [testng] 00:50:15,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:50:15,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:15,854 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-19_00-50-15.log] [testng] 00:50:15,854 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4573eb - End of configuration. [testng] [2025-03-19 00:50:16,007] [pool-1-thread-8] Initializing /data/human-embryology-2018-01-04/CS17_N365_491_whole.jpg: [testng] 00:50:16,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:50:16,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:16,012 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-19_00-50-16.log] [testng] 00:50:16,013 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d3ec4af - End of configuration. [testng] [2025-03-19 00:50:20,492] [pool-1-thread-7] Initializing /data/samples/Face.jpg: [testng] 00:50:20,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:50:20,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:20,493 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-19_00-50-20.log] [testng] 00:50:20,493 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fce7bff - End of configuration. [testng] [2025-03-19 00:50:20,642] [pool-1-thread-6] Initializing /data/darwinjob/T1_3_1_SST11D_0059.jpg: [testng] 00:50:20,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:50:20,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:20,643 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-19_00-50-20.log] [testng] 00:50:20,643 |-INFO in ch.qos.logback.core.sift.SiftProcessor@655ec145 - End of configuration. [testng] [2025-03-19 00:50:22,807] [pool-1-thread-5] Initializing /data/big-images/PB_9217_Retina_04 - 2010-07-16 19.04.48.ndpi.jpg: [testng] 00:50:22,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:50:22,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:22,808 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-19_00-50-22.log] [testng] 00:50:22,808 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19bf5d0b - End of configuration. [testng] [2025-03-19 00:50:25,723] [pool-1-thread-4] Initializing /data/samples/wall-e2.jpg: [testng] 00:50:25,723 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:50:25,723 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:25,724 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-19_00-50-25.log] [testng] 00:50:25,725 |-INFO in ch.qos.logback.core.sift.SiftProcessor@347787cd - End of configuration. [testng] [2025-03-19 00:50:25,877] [pool-1-thread-3] Initializing /data/gh-4061/magick1x2.jpg: [testng] 00:50:25,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:50:25,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:25,877 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-19_00-50-25.log] [testng] 00:50:25,878 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71b32208 - End of configuration. [testng] [2025-03-19 00:50:27,082] [pool-1-thread-2] Initializing /data/gh-4061/magick2x2.jpg: [testng] 00:50:27,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:50:27,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:27,083 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-19_00-50-27.log] [testng] 00:50:27,084 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ef32a1 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 636, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 51 seconds Finished: SUCCESS