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Started by upstream project "BIOFORMATS-test-repo" build number 383
originally caused by:
 Started by upstream project "Trigger" build number 405
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins17456429194794232592.sh
+ '[' cellomics = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_60621_merge_ci -v /uod/idr/repos/curated/cellomics:/data -v /uod/idr-scratch/merge-ci/curated/cellomics:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 03:45:54,958 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
   [testng] 03:45:54,959 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service.
   [testng] 03:45:54,959 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 03:45:54,960 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 03:45:54,960 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 03:45:54,961 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 03:45:54,961 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 03:45:54,961 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:45:54,962 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:45:54,962 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 03:45:54,962 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 03:45:54,963 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 03:45:55,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 03:45:55,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 03:45:55,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 03:45:55,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 03:45:55,143 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 03:45:55,143 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 03:45:55,143 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 03:45:55,144 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 03:45:55,144 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration.
   [testng] 03:45:55,144 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point
   [testng] 03:45:55,144 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 182 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2025-03-19 03:45:55,153] [main] java.version = 17.0.2
   [testng] 03:45:55,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 03:45:55,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:45:55,194 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-19_03-45-55.log]
   [testng] 03:45:55,195 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration.
   [testng] [2025-03-19 03:45:55,197] [main] testng.directory = /data
   [testng] [2025-03-19 03:45:55,197] [main] testng.configDirectory = /config
   [testng] [2025-03-19 03:45:55,205] [main] testng.multiplier = 1.0
   [testng] [2025-03-19 03:45:55,206] [main] testng.in-memory = false
   [testng] [2025-03-19 03:45:55,206] [main] testng.allow-missing = false
   [testng] [2025-03-19 03:45:55,206] [main] user.language = en
   [testng] [2025-03-19 03:45:55,206] [main] user.country = ${user.country}
   [testng] [2025-03-19 03:45:55,206] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2025-03-19 03:47:07,246] [main] ----------------------------------------
   [testng] [2025-03-19 03:47:07,246] [main] Total files: 2539
   [testng] [2025-03-19 03:47:07,247] [main] Scan time: 72.04 s (28 ms/file)
   [testng] [2025-03-19 03:47:07,247] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 17 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2025-03-19 03:48:27,415] [pool-1-thread-1] Initializing /data/harri/MFGTMP-PC_111018140003/MFGTMP-PC_111018140003_E04f00d0.C01: 
   [testng] 03:48:27,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 03:48:27,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:48:27,417 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-19_03-48-27.log]
   [testng] 03:48:27,417 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6008aafd - End of configuration.
   [testng] [2025-03-19 03:48:28,544] [pool-1-thread-12] Initializing /data/johannes/MFGTMP_081222130005_E07f00d0.C01: 
   [testng] 03:48:28,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 03:48:28,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:48:28,545 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-19_03-48-28.log]
   [testng] 03:48:28,546 |-INFO in ch.qos.logback.core.sift.SiftProcessor@337b7eba - End of configuration.
   [testng] [2025-03-19 03:48:29,600] [pool-1-thread-11] Initializing /data/samples/sparse-plate/plate_E03f00d0.C01: 
   [testng] 03:48:29,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 03:48:29,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:48:29,601 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-19_03-48-29.log]
   [testng] 03:48:29,601 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70b9c9a7 - End of configuration.
   [testng] [2025-03-19 03:48:30,765] [pool-1-thread-10] Initializing /data/omar/FB03f00o2.C01: 
   [testng] 03:48:30,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 03:48:30,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:48:30,766 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-19_03-48-30.log]
   [testng] 03:48:30,766 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cfd5188 - End of configuration.
   [testng] [2025-03-19 03:48:31,969] [pool-1-thread-9] Initializing /data/omar/FB03f00d0.C01: 
   [testng] 03:48:31,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 03:48:31,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:48:31,970 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-19_03-48-31.log]
   [testng] 03:48:31,970 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1690e87e - End of configuration.
   [testng] [2025-03-19 03:48:33,078] [pool-1-thread-8] Initializing /data/qa-21720/AS_09125_050117190001_A14f00d0.DIB: 
   [testng] 03:48:33,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 03:48:33,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:48:33,079 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-19_03-48-33.log]
   [testng] 03:48:33,079 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72df112a - End of configuration.
   [testng] [2025-03-19 03:48:34,137] [pool-1-thread-7] Initializing /data/omar/FB03f00d1.C01: 
   [testng] 03:48:34,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 03:48:34,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:48:34,137 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-19_03-48-34.log]
   [testng] 03:48:34,138 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c7bde09 - End of configuration.
   [testng] [2025-03-19 03:48:35,153] [pool-1-thread-6] Initializing /data/lee/icd002235_090127090001_a01f00d1.c01: 
   [testng] 03:48:35,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 03:48:35,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:48:35,154 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-19_03-48-35.log]
   [testng] 03:48:35,154 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59c48302 - End of configuration.
   [testng] [2025-03-19 03:48:36,081] [pool-1-thread-5] Initializing /data/public/BBBC001/AS_09125_050118150001_A03f00d0.DIB: 
   [testng] 03:48:36,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 03:48:36,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:48:36,082 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-19_03-48-36.log]
   [testng] 03:48:36,082 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b31582d - End of configuration.
   [testng] [2025-03-19 03:48:37,058] [pool-1-thread-4] Initializing /data/lee/AS_09125_050116030001_D03f00d0.DIB: 
   [testng] 03:48:37,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 03:48:37,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:48:37,060 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-19_03-48-37.log]
   [testng] 03:48:37,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6475b136 - End of configuration.
   [testng] [2025-03-19 03:48:38,018] [pool-1-thread-3] Initializing /data/qa-7352/test/MFGTMP-PC_130509120002_B02f00d0.C01: 
   [testng] 03:48:38,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 03:48:38,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:48:38,018 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-19_03-48-38.log]
   [testng] 03:48:38,019 |-INFO in ch.qos.logback.core.sift.SiftProcessor@461603bd - End of configuration.
   [testng] [2025-03-19 03:48:39,089] [pool-1-thread-2] Initializing /data/qa-7352/test/MFGTMP-PC_130509120002_B02f00o1.C01: 
   [testng] 03:48:39,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 03:48:39,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:48:39,090 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-19_03-48-39.log]
   [testng] 03:48:39,091 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f1ad6e4 - End of configuration.
   [testng] [2025-03-19 03:48:48,426] [pool-1-thread-4] Initializing /data/johannes/MFGTMP_081128200001_A02f239d1.C01: 
   [testng] [2025-03-19 03:48:56,270] [pool-1-thread-6] Initializing /data/omar/FB03f00o1.C01: 
   [testng] [2025-03-19 03:48:57,521] [pool-1-thread-12] Initializing /data/omar/FB03f03o2.DIB: 
   [testng] [2025-03-19 03:48:58,641] [pool-1-thread-9] Initializing /data/samples/plate-size/plate_B03f00d0.C01: 
   [testng] [2025-03-19 03:48:59,779] [pool-1-thread-10] Initializing /data/samples/different-field-count/plate_B03f00d0.C01: 
   [testng] 05:13:17,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 05:13:17,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:13:17,749 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-19_05-13-17.log]
   [testng] 05:13:17,749 |-INFO in ch.qos.logback.core.sift.SiftProcessor@574b7f4a - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 901, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 87 minutes 27 seconds
Finished: SUCCESS