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Started by upstream project "BIOFORMATS-test-repo" build number 383 originally caused by: Started by upstream project "Trigger" build number 405 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins12845865427805006956.sh + '[' apng = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_60644_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 05:47:26,939 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 05:47:26,941 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 05:47:26,941 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:47:26,941 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:47:26,942 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 05:47:26,942 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 05:47:26,942 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 05:47:26,942 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:47:26,943 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:47:26,943 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 05:47:26,944 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 05:47:26,944 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 05:47:27,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 05:47:27,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 05:47:27,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 05:47:27,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 05:47:27,123 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 05:47:27,123 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 05:47:27,123 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 05:47:27,124 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 05:47:27,124 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 05:47:27,124 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 05:47:27,124 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 181 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-19 05:47:27,132] [main] java.version = 17.0.2 [testng] 05:47:27,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:47:27,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:47:27,173 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-19_05-47-27.log] [testng] 05:47:27,174 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-03-19 05:47:27,176] [main] testng.directory = /data [testng] [2025-03-19 05:47:27,176] [main] testng.configDirectory = /config [testng] [2025-03-19 05:47:27,184] [main] testng.multiplier = 1.0 [testng] [2025-03-19 05:47:27,185] [main] testng.in-memory = false [testng] [2025-03-19 05:47:27,185] [main] testng.allow-missing = false [testng] [2025-03-19 05:47:27,185] [main] user.language = en [testng] [2025-03-19 05:47:27,185] [main] user.country = ${user.country} [testng] [2025-03-19 05:47:27,185] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-19 05:47:28,306] [main] ---------------------------------------- [testng] [2025-03-19 05:47:28,306] [main] Total files: 21 [testng] [2025-03-19 05:47:28,306] [main] Scan time: 1.121 s (53 ms/file) [testng] [2025-03-19 05:47:28,306] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-19 05:47:32,713] [pool-1-thread-1] Initializing /data/samples/orbit.png: [testng] 05:47:32,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:47:32,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:47:32,714 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-19_05-47-32.log] [testng] 05:47:32,715 |-INFO in ch.qos.logback.core.sift.SiftProcessor@625d4514 - End of configuration. [testng] [2025-03-19 05:47:32,852] [pool-1-thread-12] Initializing /data/samples/daniel_coltri_two.png: [testng] 05:47:32,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:47:32,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:47:32,853 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-19_05-47-32.log] [testng] 05:47:32,853 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d3b6238 - End of configuration. [testng] [2025-03-19 05:47:32,909] [pool-1-thread-11] Initializing /data/qa-7473/x.png: [testng] 05:47:32,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:47:32,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:47:32,910 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-19_05-47-32.log] [testng] 05:47:32,911 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bca90ae - End of configuration. [testng] [2025-03-19 05:47:32,980] [pool-1-thread-10] Initializing /data/samples/MoonPhases.png: [testng] 05:47:32,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:47:32,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:47:32,981 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-19_05-47-32.log] [testng] 05:47:32,981 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74858736 - End of configuration. [testng] [2025-03-19 05:47:33,042] [pool-1-thread-9] Initializing /data/samples/william_wong01.png: [testng] 05:47:33,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:47:33,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:47:33,043 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-19_05-47-33.log] [testng] 05:47:33,044 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c3bfebd - End of configuration. [testng] [2025-03-19 05:47:33,112] [pool-1-thread-8] Initializing /data/samples/joanna_viera01.png: [testng] 05:47:33,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:47:33,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:47:33,113 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-19_05-47-33.log] [testng] 05:47:33,113 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ace1a5 - End of configuration. [testng] [2025-03-19 05:47:33,180] [pool-1-thread-7] Initializing /data/samples/william_wong05.png: [testng] 05:47:33,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:47:33,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:47:33,182 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-19_05-47-33.log] [testng] 05:47:33,182 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d481e9f - End of configuration. [testng] [2025-03-19 05:47:33,249] [pool-1-thread-6] Initializing /data/samples/atom.png: [testng] 05:47:33,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:47:33,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:47:33,250 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-19_05-47-33.log] [testng] 05:47:33,251 |-INFO in ch.qos.logback.core.sift.SiftProcessor@270e4cf6 - End of configuration. [testng] [2025-03-19 05:47:33,311] [pool-1-thread-5] Initializing /data/samples/spinfox.png: [testng] 05:47:33,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:47:33,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:47:33,312 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-19_05-47-33.log] [testng] 05:47:33,313 |-INFO in ch.qos.logback.core.sift.SiftProcessor@477bcf96 - End of configuration. [testng] [2025-03-19 05:47:33,380] [pool-1-thread-4] Initializing /data/samples/chompy2.png: [testng] 05:47:33,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:47:33,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:47:33,381 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-19_05-47-33.log] [testng] 05:47:33,381 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fb0e2b - End of configuration. [testng] [2025-03-19 05:47:33,434] [pool-1-thread-3] Initializing /data/qa-7473/n.tif: [testng] 05:47:33,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:47:33,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:47:33,435 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-19_05-47-33.log] [testng] 05:47:33,436 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37f51f2c - End of configuration. [testng] [2025-03-19 05:47:35,537] [pool-1-thread-2] Initializing /data/samples/daniel_coltri_one.png: [testng] 05:47:35,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:47:35,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:47:35,538 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-19_05-47-35.log] [testng] 05:47:35,538 |-INFO in ch.qos.logback.core.sift.SiftProcessor@165209fe - End of configuration. [testng] [2025-03-19 05:47:38,696] [pool-1-thread-12] Initializing /data/samples/StarV838.png: [testng] [2025-03-19 05:47:38,766] [pool-1-thread-10] Initializing /data/samples/monkey_apng.png: [testng] [2025-03-19 05:47:38,827] [pool-1-thread-8] Initializing /data/colin/test.sfstdge.png: [testng] [2025-03-19 05:47:38,887] [pool-1-thread-11] Initializing /data/samples/PhugAnimation3.png: [testng] [2025-03-19 05:47:38,945] [pool-1-thread-7] Initializing /data/samples/phug_logo.png: [testng] [2025-03-19 05:47:39,011] [pool-1-thread-4] Initializing /data/samples/william_wong02.png: [testng] [2025-03-19 05:47:39,177] [pool-1-thread-5] Initializing /data/samples/Matrix.png: [testng] [2025-03-19 05:47:39,245] [pool-1-thread-6] Initializing /data/samples/william_wong04.png: [testng] [2025-03-19 05:47:39,300] [pool-1-thread-9] Initializing /data/samples/Sun.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 23 seconds Finished: SUCCESS