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Started by upstream project "BIOFORMATS-test-repo" build number 384 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins3612709123003597853.sh + '[' zeiss-tiff = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_60811_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 17:30:09,497 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 17:30:09,499 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 17:30:09,499 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 17:30:09,500 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 17:30:09,500 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 17:30:09,500 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 17:30:09,501 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 17:30:09,501 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 17:30:09,501 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 17:30:09,502 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 17:30:09,502 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 17:30:09,502 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 17:30:09,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 17:30:09,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 17:30:09,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 17:30:09,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 17:30:09,687 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 17:30:09,687 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 17:30:09,687 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 17:30:09,687 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 17:30:09,687 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 17:30:09,688 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 17:30:09,688 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 187 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-19 17:30:09,697] [main] java.version = 17.0.2 [testng] 17:30:09,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 17:30:09,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:30:09,740 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-19_17-30-09.log] [testng] 17:30:09,742 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-03-19 17:30:09,744] [main] testng.directory = /data [testng] [2025-03-19 17:30:09,744] [main] testng.configDirectory = /config [testng] [2025-03-19 17:30:09,752] [main] testng.multiplier = 1.0 [testng] [2025-03-19 17:30:09,753] [main] testng.in-memory = false [testng] [2025-03-19 17:30:09,753] [main] testng.allow-missing = false [testng] [2025-03-19 17:30:09,753] [main] user.language = en [testng] [2025-03-19 17:30:09,753] [main] user.country = ${user.country} [testng] [2025-03-19 17:30:09,753] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-19 17:34:38,158] [main] ---------------------------------------- [testng] [2025-03-19 17:34:38,159] [main] Total files: 15735 [testng] [2025-03-19 17:34:38,159] [main] Scan time: 268.404 s (17 ms/file) [testng] [2025-03-19 17:34:38,159] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 125 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-19 17:40:26,553] [pool-1-thread-1] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif: [testng] 17:40:26,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 17:40:26,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:40:26,555 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-19_17-40-26.log] [testng] 17:40:26,555 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bb84065 - End of configuration. [testng] [2025-03-19 17:40:29,066] [pool-1-thread-12] Initializing /data/converted/joseph/E-2009_0022.tif: [testng] 17:40:29,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 17:40:29,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:40:29,067 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-19_17-40-29.log] [testng] 17:40:29,068 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cff9634 - End of configuration. [testng] [2025-03-19 17:40:32,623] [pool-1-thread-11] Initializing /data/converted/lior/live+cf5b.tif: [testng] 17:40:32,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 17:40:32,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:40:32,624 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-19_17-40-32.log] [testng] 17:40:32,624 |-INFO in ch.qos.logback.core.sift.SiftProcessor@731f8a88 - End of configuration. [testng] [2025-03-19 17:40:34,451] [pool-1-thread-10] Initializing /data/converted/michel/e.tif: [testng] 17:40:34,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 17:40:34,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:40:34,452 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-19_17-40-34.log] [testng] 17:40:34,452 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70ddd10f - End of configuration. [testng] [2025-03-19 17:40:36,880] [pool-1-thread-9] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif: [testng] 17:40:36,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 17:40:36,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:40:36,880 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-19_17-40-36.log] [testng] 17:40:36,881 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7511a47e - End of configuration. [testng] [2025-03-19 17:40:38,781] [pool-1-thread-8] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif: [testng] 17:40:38,781 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 17:40:38,781 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:40:38,782 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-19_17-40-38.log] [testng] 17:40:38,782 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cbea213 - End of configuration. [testng] [2025-03-19 17:40:40,436] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif: [testng] 17:40:40,436 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 17:40:40,436 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:40:40,437 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-19_17-40-40.log] [testng] 17:40:40,437 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37cda7e8 - End of configuration. [testng] [2025-03-19 17:40:41,953] [pool-1-thread-6] Initializing /data/scott/Slide133-08.tif: [testng] 17:40:41,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 17:40:41,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:40:41,954 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-19_17-40-41.log] [testng] 17:40:41,954 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79860d34 - End of configuration. [testng] [2025-03-19 17:40:43,240] [pool-1-thread-5] Initializing /data/converted/othmar/z-stack.tif: [testng] 17:40:43,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 17:40:43,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:40:43,241 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-19_17-40-43.log] [testng] 17:40:43,241 |-INFO in ch.qos.logback.core.sift.SiftProcessor@203ed516 - End of configuration. [testng] [2025-03-19 17:40:45,729] [pool-1-thread-4] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif: [testng] 17:40:45,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 17:40:45,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:40:45,730 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-19_17-40-45.log] [testng] 17:40:45,730 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e59fa94 - End of configuration. [testng] [2025-03-19 17:40:48,325] [pool-1-thread-3] Initializing /data/converted/converted/2chzt.tif: [testng] 17:40:48,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 17:40:48,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:40:48,326 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-19_17-40-48.log] [testng] 17:40:48,326 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26ec8396 - End of configuration. [testng] [2025-03-19 17:40:50,750] [pool-1-thread-2] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif: [testng] 17:40:50,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 17:40:50,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:40:50,751 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-19_17-40-50.log] [testng] 17:40:50,751 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a8d3a67 - End of configuration. [testng] [2025-03-19 17:41:35,392] [pool-1-thread-1] Initializing /data/converted/darren/section0002_w1.tif: [testng] [2025-03-19 17:41:39,954] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif: [testng] [2025-03-19 17:41:42,662] [pool-1-thread-6] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif: [testng] [2025-03-19 17:42:00,777] [pool-1-thread-8] Initializing /data/converted/vladan/vladan.tif: [testng] [2025-03-19 17:42:37,516] [pool-1-thread-11] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif: [testng] [2025-03-19 17:42:45,178] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif: [testng] [2025-03-19 17:43:00,005] [pool-1-thread-10] Initializing /data/converted/michel/b.tif: [testng] [2025-03-19 17:43:25,765] [pool-1-thread-6] Initializing /data/converted/markus/30channels_exposure-series.tif: [testng] [2025-03-19 17:43:30,240] [pool-1-thread-11] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif: [testng] [2025-03-19 17:44:18,183] [pool-1-thread-10] Initializing /data/converted/rolf/example_1-2010_11_25.tif: [testng] [2025-03-19 17:44:52,240] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif: [testng] [2025-03-19 17:45:16,114] [pool-1-thread-10] Initializing /data/converted/othmar/mozaic.tif: [testng] [2025-03-19 17:47:42,473] [pool-1-thread-6] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif: [testng] [2025-03-19 17:51:28,279] [pool-1-thread-10] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif: [testng] [2025-03-19 17:52:14,517] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif: [testng] [2025-03-19 17:52:17,773] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif: [testng] [2025-03-19 17:53:48,590] [pool-1-thread-7] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif: [testng] [2025-03-19 17:54:02,754] [pool-1-thread-11] Initializing /data/converted/strand/2Colors1Plane.tif: [testng] [2025-03-19 17:54:58,443] [pool-1-thread-2] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif: [testng] [2025-03-19 17:55:07,938] [pool-1-thread-1] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif: [testng] [2025-03-19 17:55:31,271] [pool-1-thread-11] Initializing /data/converted/stephan/notok2.tif: [testng] [2025-03-19 17:55:52,665] [pool-1-thread-9] Initializing /data/dorai/F_ZImage10_(X10)_C.tif: [testng] [2025-03-19 17:56:33,919] [pool-1-thread-9] Initializing /data/converted/eirinn/demo-tile.tif: [testng] [2025-03-19 17:57:29,934] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif: [testng] [2025-03-19 17:57:41,177] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif: [testng] [2025-03-19 17:58:08,710] [pool-1-thread-11] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif: [testng] [2025-03-19 18:00:07,422] [pool-1-thread-1] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif: [testng] [2025-03-19 18:00:52,966] [pool-1-thread-10] Initializing /data/converted/dan/zstack_convalaria.tif: [testng] [2025-03-19 18:01:43,851] [pool-1-thread-10] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif: [testng] [2025-03-19 18:02:40,012] [pool-1-thread-6] Initializing /data/converted/stephan/notok1.tif: [testng] [2025-03-19 18:04:08,187] [pool-1-thread-8] Initializing /data/scott/Slide133-01.tif: [testng] [2025-03-19 18:04:43,105] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif: [testng] [2025-03-19 18:04:53,101] [pool-1-thread-8] Initializing /data/samples/mri-stack/mri-stack.tif: [testng] [2025-03-19 18:06:01,277] [pool-1-thread-8] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif: [testng] [2025-03-19 18:06:33,877] [pool-1-thread-6] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif: [testng] [2025-03-19 18:07:43,876] [pool-1-thread-8] Initializing /data/converted/darren/section0001_w1.tif: [testng] [2025-03-19 18:08:50,450] [pool-1-thread-8] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif: [testng] [2025-03-19 18:09:00,757] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif: [testng] [2025-03-19 18:10:35,353] [pool-1-thread-8] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif: [testng] [2025-03-19 18:11:39,064] [pool-1-thread-9] Initializing /data/converted/markus/Mouse-newborn-panorama.tif: [testng] [2025-03-19 18:11:51,154] [pool-1-thread-8] Initializing /data/othmar/mozaic.tif: [testng] [2025-03-19 18:12:15,500] [pool-1-thread-12] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif: [testng] [2025-03-19 18:13:25,244] [pool-1-thread-2] Initializing /data/converted/karsten/Bild1.tif: [testng] [2025-03-19 18:13:37,826] [pool-1-thread-12] Initializing /data/converted/lior/live+cf2b.tif: [testng] [2025-03-19 18:14:04,573] [pool-1-thread-9] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif: [testng] [2025-03-19 18:15:28,994] [pool-1-thread-2] Initializing /data/converted/rolf/example_2-2010_11_25.tif: [testng] [2025-03-19 18:16:19,669] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif: [testng] [2025-03-19 18:17:07,175] [pool-1-thread-2] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif: [testng] [2025-03-19 18:17:40,866] [pool-1-thread-1] Initializing /data/converted/michel/d.tif: [testng] [2025-03-19 18:19:40,187] [pool-1-thread-2] Initializing /data/converted/karsten/Bild2.tif: [testng] [2025-03-19 18:19:46,231] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif: [testng] [2025-03-19 18:21:37,928] [pool-1-thread-2] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif: [testng] [2025-03-19 18:22:49,706] [pool-1-thread-2] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif: [testng] [2025-03-19 18:23:54,449] [pool-1-thread-8] Initializing /data/converted/dietmar/dapi-texasred-0015.tif: [testng] [2025-03-19 18:28:12,546] [pool-1-thread-5] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif: [testng] [2025-03-19 18:30:22,086] [pool-1-thread-4] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif: [testng] [2025-03-19 18:31:44,558] [pool-1-thread-5] Initializing /data/converted/dietmar/137.tif: [testng] [2025-03-19 18:36:53,408] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif: [testng] [2025-03-19 18:38:59,038] [pool-1-thread-7] Initializing /data/converted/converted/damian-compressed.tif: [testng] [2025-03-19 18:40:03,937] [pool-1-thread-8] Initializing /data/converted/jeffrey/750-30-03.tif: [testng] [2025-03-19 18:40:19,893] [pool-1-thread-7] Initializing /data/converted/monica/Monica_elegans_movie.tif: [testng] [2025-03-19 18:42:58,806] [pool-1-thread-4] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif: [testng] [2025-03-19 18:43:40,705] [pool-1-thread-8] Initializing /data/converted/dan/adultnr1.tif: [testng] [2025-03-19 18:44:06,768] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif: [testng] [2025-03-19 18:46:57,820] [pool-1-thread-4] Initializing /data/converted/joseph/E-2009-0001a.tif: [testng] [2025-03-19 18:49:40,107] [pool-1-thread-8] Initializing /data/converted/converted/2chz.tif: [testng] [2025-03-19 18:49:49,045] [pool-1-thread-9] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif: [testng] 18:52:35,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 18:52:35,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:52:35,347 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-19_18-52-35.log] [testng] 18:52:35,347 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b01cde8 - End of configuration. [testng] [2025-03-19 19:02:38,600] [pool-1-thread-5] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif: [testng] [2025-03-19 19:03:15,751] [pool-1-thread-8] Initializing /data/converted/converted/mri-stack.tif: [testng] [2025-03-19 19:05:53,650] [pool-1-thread-8] Initializing /data/converted/kelsey/432x342BW.tif: [testng] [2025-03-19 19:06:59,927] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif: [testng] [2025-03-19 19:07:48,604] [pool-1-thread-3] Initializing /data/converted/dietmar/138.tif: [testng] [2025-03-19 19:08:53,818] [pool-1-thread-8] Initializing /data/converted/rachel/40K 30s A1.tif: [testng] [2025-03-19 19:11:46,062] [pool-1-thread-8] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif: [testng] [2025-03-19 19:12:53,299] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif: [testng] [2025-03-19 19:13:47,681] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif: [testng] [2025-03-19 19:14:42,482] [pool-1-thread-11] Initializing /data/converted/kelsey/1300x1030BW.tif: [testng] [2025-03-19 19:17:11,139] [pool-1-thread-11] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif: [testng] [2025-03-19 19:26:46,378] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif: [testng] [2025-03-19 19:32:06,346] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif: [testng] [2025-03-19 19:36:50,701] [pool-1-thread-4] Initializing /data/converted/kelsey/650x514BW.tif: [testng] 19:37:11,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 19:37:11,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 19:37:11,120 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-19_19-37-11.log] [testng] 19:37:11,121 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d50a326 - End of configuration. [testng] [2025-03-19 19:39:09,349] [pool-1-thread-4] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif: [testng] [2025-03-19 19:46:32,423] [pool-1-thread-9] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif: [testng] [2025-03-19 19:49:48,945] [pool-1-thread-3] Initializing /data/converted/michel/c.tif: [testng] [2025-03-19 19:52:17,538] [pool-1-thread-3] Initializing /data/converted/converted/damian.tif: [testng] [2025-03-19 19:53:45,936] [pool-1-thread-3] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif: [testng] [2025-03-19 19:53:53,700] [pool-1-thread-12] Initializing /data/converted/joseph/E-2009-0004.tif: [testng] [2025-03-19 19:54:01,633] [pool-1-thread-6] Initializing /data/converted/michel/a.tif: [testng] [2025-03-19 19:54:50,452] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif: [testng] [2025-03-19 19:54:57,230] [pool-1-thread-8] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif: [testng] [2025-03-19 19:55:15,102] [pool-1-thread-6] Initializing /data/converted/markus/HighSpeedParas.tif: [testng] [2025-03-19 19:56:52,772] [pool-1-thread-4] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif: [testng] [2025-03-19 19:58:02,669] [pool-1-thread-5] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif: [testng] [2025-03-19 20:01:40,108] [pool-1-thread-1] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif: [testng] [2025-03-19 20:03:16,333] [pool-1-thread-1] Initializing /data/converted/karsten/247096n3s3s9.tif: [testng] 20:04:26,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 20:04:26,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:04:26,130 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-19_20-04-26.log] [testng] 20:04:26,130 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a18695e - End of configuration. [testng] [2025-03-19 20:07:40,694] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif: [testng] [2025-03-19 20:07:58,957] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif: [testng] [2025-03-19 20:11:31,582] [pool-1-thread-1] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif: [testng] [2025-03-19 20:14:10,178] [pool-1-thread-5] Initializing /data/converted/nicolas/image.tif: [testng] [2025-03-19 20:14:41,015] [pool-1-thread-3] Initializing /data/converted/sebastien/F1.tif: [testng] [2025-03-19 20:15:36,129] [pool-1-thread-5] Initializing /data/converted/rachel/40K 30s A2.tif: [testng] [2025-03-19 20:17:15,941] [pool-1-thread-10] Initializing /data/converted/susan/BY4741NQ2.tif: [testng] [2025-03-19 20:18:22,500] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif: [testng] [2025-03-19 20:20:21,403] [pool-1-thread-10] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif: [testng] [2025-03-19 20:30:24,744] [pool-1-thread-9] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif: [testng] [2025-03-19 20:33:19,136] [pool-1-thread-12] Initializing /data/scott/Slide133-04.tif: [testng] [2025-03-19 20:34:00,273] [pool-1-thread-3] Initializing /data/converted/markus/Long_TL_CElegans.tif: [testng] [2025-03-19 20:34:56,166] [pool-1-thread-10] Initializing /data/converted/thomas/test_axiocam_3_1.tif: [testng] [2025-03-19 20:35:44,460] [pool-1-thread-12] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif: [testng] [2025-03-19 20:36:03,539] [pool-1-thread-8] Initializing /data/converted/sebastien/test.tif: [testng] [2025-03-19 20:38:16,629] [pool-1-thread-10] Initializing /data/scott/Slide133-11.tif: [testng] [2025-03-19 20:39:30,135] [pool-1-thread-4] Initializing /data/converted/david/snap-181518-0001.tif: [testng] [2025-03-19 20:40:14,098] [pool-1-thread-10] Initializing /data/converted/miso/Aufnahme-184058-0002.tif: [testng] 22:10:04,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 22:10:04,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 22:10:04,236 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-19_22-10-04.log] [testng] 22:10:04,237 |-INFO in ch.qos.logback.core.sift.SiftProcessor@104397dc - End of configuration. [testng] 22:13:02,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 22:13:02,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 22:13:02,793 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-19_22-13-02.log] [testng] 22:13:02,794 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71e6a51 - End of configuration. [testng] 00:01:21,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:01:21,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:01:21,812 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-20_00-01-21.log] [testng] 00:01:21,813 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57775859 - End of configuration. [testng] 00:06:39,868 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:06:39,868 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:06:39,869 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-20_00-06-39.log] [testng] 00:06:39,869 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5634f627 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 6625, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 396 minutes 36 seconds Finished: SUCCESS