![[Jenkins]](/jenkins/static/7a3257c3/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 384 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins1434104823360445980.sh + '[' imagepro = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_60840_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 21:33:41,540 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 21:33:41,541 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 21:33:41,541 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 21:33:41,542 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 21:33:41,542 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 21:33:41,542 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 21:33:41,543 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 21:33:41,543 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 21:33:41,543 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 21:33:41,544 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 21:33:41,544 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 21:33:41,544 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 21:33:41,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 21:33:41,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 21:33:41,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 21:33:41,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 21:33:41,722 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 21:33:41,722 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 21:33:41,722 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 21:33:41,723 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 21:33:41,723 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 21:33:41,723 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 21:33:41,724 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 181 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-19 21:33:41,732] [main] java.version = 17.0.2 [testng] 21:33:41,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 21:33:41,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 21:33:41,773 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-19_21-33-41.log] [testng] 21:33:41,774 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-03-19 21:33:41,776] [main] testng.directory = /data [testng] [2025-03-19 21:33:41,776] [main] testng.configDirectory = /config [testng] [2025-03-19 21:33:41,784] [main] testng.multiplier = 1.0 [testng] [2025-03-19 21:33:41,785] [main] testng.in-memory = false [testng] [2025-03-19 21:33:41,785] [main] testng.allow-missing = false [testng] [2025-03-19 21:33:41,785] [main] user.language = en [testng] [2025-03-19 21:33:41,785] [main] user.country = ${user.country} [testng] [2025-03-19 21:33:41,785] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-19 21:33:57,540] [main] ---------------------------------------- [testng] [2025-03-19 21:33:57,540] [main] Total files: 22 [testng] [2025-03-19 21:33:57,540] [main] Scan time: 15.755 s (716 ms/file) [testng] [2025-03-19 21:33:57,540] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-19 21:34:44,841] [pool-1-thread-1] Initializing /data/converted/mitosis-test.seq: [testng] 21:34:44,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 21:34:44,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 21:34:44,843 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-19_21-34-44.log] [testng] 21:34:44,843 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63679941 - End of configuration. [testng] [2025-03-19 21:34:45,861] [pool-1-thread-12] Initializing /data/alex/AFAset0003.ips: [testng] 21:34:45,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 21:34:45,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 21:34:45,862 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-19_21-34-45.log] [testng] 21:34:45,862 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d183be5 - End of configuration. [testng] [2025-03-19 21:34:47,033] [pool-1-thread-11] Initializing /data/samples/TISSUE.TIF: [testng] 21:34:47,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 21:34:47,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 21:34:47,035 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-19_21-34-47.log] [testng] 21:34:47,035 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a1687e9 - End of configuration. [testng] [2025-03-19 21:34:50,139] [pool-1-thread-10] Initializing /data/converted/clown8c.tif: [testng] 21:34:50,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 21:34:50,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 21:34:50,140 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-19_21-34-50.log] [testng] 21:34:50,141 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27f733b0 - End of configuration. [testng] [2025-03-19 21:34:53,407] [pool-1-thread-9] Initializing /data/converted/NESb_C2_TP7.tiff: [testng] 21:34:53,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 21:34:53,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 21:34:53,408 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-19_21-34-53.log] [testng] 21:34:53,408 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e5377a5 - End of configuration. [testng] [2025-03-19 21:34:56,685] [pool-1-thread-8] Initializing /data/converted/NESb_C2_TP7.ipw: [testng] 21:34:56,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 21:34:56,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 21:34:56,686 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-19_21-34-56.log] [testng] 21:34:56,686 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a23b77a - End of configuration. [testng] [2025-03-19 21:34:58,086] [pool-1-thread-7] Initializing /data/converted/clown8c.ipw: [testng] 21:34:58,086 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 21:34:58,086 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 21:34:58,087 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-19_21-34-58.log] [testng] 21:34:58,087 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2839a1a4 - End of configuration. [testng] [2025-03-19 21:34:59,435] [pool-1-thread-6] Initializing /data/xiuwen/head2.seq: [testng] 21:34:59,436 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 21:34:59,436 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 21:34:59,436 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-19_21-34-59.log] [testng] 21:34:59,437 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6475a73b - End of configuration. [testng] [2025-03-19 21:35:01,115] [pool-1-thread-5] Initializing /data/converted/dub01.seq: [testng] 21:35:01,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 21:35:01,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 21:35:01,115 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-19_21-35-01.log] [testng] 21:35:01,116 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13a088ec - End of configuration. [testng] [2025-03-19 21:35:02,548] [pool-1-thread-4] Initializing /data/converted/clown.seq: [testng] 21:35:02,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 21:35:02,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 21:35:02,548 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-19_21-35-02.log] [testng] 21:35:02,549 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ef80fab - End of configuration. [testng] [2025-03-19 21:35:04,088] [pool-1-thread-3] Initializing /data/converted/clown.ipw: [testng] 21:35:04,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 21:35:04,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 21:35:04,089 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-19_21-35-04.log] [testng] 21:35:04,089 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c84b24c - End of configuration. [testng] [2025-03-19 21:35:05,836] [pool-1-thread-2] Initializing /data/converted/clown8c.seq: [testng] 21:35:05,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 21:35:05,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 21:35:05,837 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-19_21-35-05.log] [testng] 21:35:05,837 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3da10a4e - End of configuration. [testng] [2025-03-19 21:35:19,704] [pool-1-thread-7] Initializing /data/samples/PROBE.TIF: [testng] [2025-03-19 21:35:22,039] [pool-1-thread-8] Initializing /data/converted/dub01.ipw: [testng] [2025-03-19 21:35:24,798] [pool-1-thread-3] Initializing /data/converted/clown.tif: [testng] [2025-03-19 21:35:27,469] [pool-1-thread-2] Initializing /data/converted/mitosis-test.ipw: [testng] [2025-03-19 21:35:29,886] [pool-1-thread-4] Initializing /data/converted/dub01.pic: [testng] [2025-03-19 21:35:32,142] [pool-1-thread-1] Initializing /data/converted/mitosis-test.tif: [testng] [2025-03-19 21:35:37,600] [pool-1-thread-5] Initializing /data/samples/HEART.SEQ: [testng] [2025-03-19 21:35:41,452] [pool-1-thread-6] Initializing /data/converted/NESb_C2_TP7.seq: [testng] [2025-03-19 21:35:55,403] [pool-1-thread-10] Initializing /data/samples/FLDUAL.TIF: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 10 minutes 38 seconds Finished: SUCCESS