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Started by upstream project "BIOFORMATS-test-repo" build number 385 originally caused by: Started by upstream project "Trigger" build number 406 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins13845847619560120792.sh + '[' lim = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_60862_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:50:41,129 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:50:41,131 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - No custom configurators were discovered as a service. [testng] 00:50:41,131 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:50:41,131 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:50:41,132 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:50:41,132 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:50:41,132 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:50:41,132 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:50:41,133 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:50:41,133 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:50:41,134 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:50:41,134 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:50:41,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:50:41,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:50:41,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:50:41,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:50:41,308 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:50:41,308 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:50:41,308 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:50:41,308 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:50:41,309 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@4310d43 - End of configuration. [testng] 00:50:41,309 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1b11171f - Registering current configuration as safe fallback point [testng] 00:50:41,309 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 176 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-20 00:50:41,318] [main] java.version = 21 [testng] 00:50:41,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:50:41,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:41,360 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-20_00-50-41.log] [testng] 00:50:41,361 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69504ae9 - End of configuration. [testng] [2025-03-20 00:50:41,362] [main] testng.directory = /data [testng] [2025-03-20 00:50:41,363] [main] testng.configDirectory = /config [testng] [2025-03-20 00:50:41,371] [main] testng.multiplier = 1.0 [testng] [2025-03-20 00:50:41,371] [main] testng.in-memory = false [testng] [2025-03-20 00:50:41,371] [main] testng.allow-missing = false [testng] [2025-03-20 00:50:41,371] [main] user.language = en [testng] [2025-03-20 00:50:41,371] [main] user.country = ${user.country} [testng] [2025-03-20 00:50:41,371] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-20 00:50:42,254] [main] ---------------------------------------- [testng] [2025-03-20 00:50:42,254] [main] Total files: 21 [testng] [2025-03-20 00:50:42,254] [main] Scan time: 0.883 s (42 ms/file) [testng] [2025-03-20 00:50:42,254] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-20 00:51:00,478] [pool-1-thread-1] Initializing /data/venu/Kontrolle0019.lim: [testng] 00:51:00,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:51:00,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:00,479 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-20_00-51-00.log] [testng] 00:51:00,480 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50dbcb54 - End of configuration. [testng] [2025-03-20 00:51:01,572] [pool-1-thread-12] Initializing /data/venu/Kontrolle0014.lim: [testng] 00:51:01,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:51:01,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:01,573 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-20_00-51-01.log] [testng] 00:51:01,574 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49ff175 - End of configuration. [testng] [2025-03-20 00:51:02,714] [pool-1-thread-11] Initializing /data/venu/Kontrolle0003.lim: [testng] 00:51:02,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:51:02,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:02,715 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-20_00-51-02.log] [testng] 00:51:02,716 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b460e5e - End of configuration. [testng] [2025-03-20 00:51:03,830] [pool-1-thread-10] Initializing /data/venu/Kontrolle0020.lim: [testng] 00:51:03,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:51:03,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:03,832 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-20_00-51-03.log] [testng] 00:51:03,832 |-INFO in ch.qos.logback.core.sift.SiftProcessor@505501df - End of configuration. [testng] [2025-03-20 00:51:04,782] [pool-1-thread-9] Initializing /data/venu/Kontrolle0017.lim: [testng] 00:51:04,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:51:04,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:04,783 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-20_00-51-04.log] [testng] 00:51:04,783 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58da4d70 - End of configuration. [testng] [2025-03-20 00:51:05,766] [pool-1-thread-8] Initializing /data/venu/Kontrolle0010.lim: [testng] 00:51:05,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:51:05,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:05,768 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-20_00-51-05.log] [testng] 00:51:05,769 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fedd066 - End of configuration. [testng] [2025-03-20 00:51:06,799] [pool-1-thread-7] Initializing /data/venu/Kontrolle0013.lim: [testng] 00:51:06,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:51:06,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:06,800 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-20_00-51-06.log] [testng] 00:51:06,800 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50de7fe1 - End of configuration. [testng] [2025-03-20 00:51:07,750] [pool-1-thread-6] Initializing /data/venu/Kontrolle0011.lim: [testng] 00:51:07,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:51:07,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:07,751 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-20_00-51-07.log] [testng] 00:51:07,752 |-INFO in ch.qos.logback.core.sift.SiftProcessor@105f67d1 - End of configuration. [testng] [2025-03-20 00:51:08,935] [pool-1-thread-5] Initializing /data/venu/Kontrolle0021.lim: [testng] 00:51:08,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:51:08,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:08,936 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-20_00-51-08.log] [testng] 00:51:08,936 |-INFO in ch.qos.logback.core.sift.SiftProcessor@604c2618 - End of configuration. [testng] [2025-03-20 00:51:09,877] [pool-1-thread-4] Initializing /data/venu/Kontrolle0018.lim: [testng] 00:51:09,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:51:09,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:09,878 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-20_00-51-09.log] [testng] 00:51:09,879 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61c781c1 - End of configuration. [testng] [2025-03-20 00:51:10,197] [pool-1-thread-3] Initializing /data/venu/Kontrolle0015.lim: [testng] 00:51:10,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:51:10,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:10,198 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-20_00-51-10.log] [testng] 00:51:10,199 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fcef0b1 - End of configuration. [testng] [2025-03-20 00:51:11,178] [pool-1-thread-2] Initializing /data/venu/Kontrolle0005.lim: [testng] 00:51:11,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:51:11,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:11,179 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-20_00-51-11.log] [testng] 00:51:11,179 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13929620 - End of configuration. [testng] [2025-03-20 00:51:19,384] [pool-1-thread-9] Initializing /data/venu/Kontrolle0004.lim: [testng] [2025-03-20 00:51:19,911] [pool-1-thread-7] Initializing /data/venu/Kontrolle0016.lim: [testng] [2025-03-20 00:51:20,542] [pool-1-thread-1] Initializing /data/venu/Kontrolle0008.lim: [testng] [2025-03-20 00:51:21,493] [pool-1-thread-12] Initializing /data/venu/Kontrolle0002.lim: [testng] [2025-03-20 00:51:22,501] [pool-1-thread-5] Initializing /data/venu/Kontrolle0007.lim: [testng] [2025-03-20 00:51:24,001] [pool-1-thread-10] Initializing /data/venu/Kontrolle0001.lim: [testng] [2025-03-20 00:51:24,811] [pool-1-thread-3] Initializing /data/venu/Kontrolle0012.lim: [testng] [2025-03-20 00:51:25,667] [pool-1-thread-6] Initializing /data/venu/Kontrolle0009.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 56 seconds Finished: SUCCESS