![[Jenkins]](/jenkins/static/f8f0d1dd/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 385 originally caused by: Started by upstream project "Trigger" build number 406 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins17868236378534759296.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_60936_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 04:37:40,932 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 04:37:40,934 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - No custom configurators were discovered as a service. [testng] 04:37:40,934 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:37:40,934 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:37:40,935 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:37:40,935 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:37:40,935 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:37:40,935 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:37:40,936 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:37:40,936 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:37:40,937 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:37:40,937 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:37:41,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:37:41,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:37:41,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:37:41,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:37:41,123 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:37:41,123 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:37:41,123 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:37:41,124 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:37:41,124 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@4310d43 - End of configuration. [testng] 04:37:41,125 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1b11171f - Registering current configuration as safe fallback point [testng] 04:37:41,125 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 189 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-20 04:37:41,134] [main] java.version = 21 [testng] 04:37:41,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:37:41,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:37:41,178 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-20_04-37-41.log] [testng] 04:37:41,179 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69504ae9 - End of configuration. [testng] [2025-03-20 04:37:41,181] [main] testng.directory = /data [testng] [2025-03-20 04:37:41,182] [main] testng.configDirectory = /config [testng] [2025-03-20 04:37:41,192] [main] testng.multiplier = 1.0 [testng] [2025-03-20 04:37:41,192] [main] testng.in-memory = false [testng] [2025-03-20 04:37:41,192] [main] testng.allow-missing = false [testng] [2025-03-20 04:37:41,192] [main] user.language = en [testng] [2025-03-20 04:37:41,193] [main] user.country = ${user.country} [testng] [2025-03-20 04:37:41,193] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-20 05:07:06,358] [main] ---------------------------------------- [testng] [2025-03-20 05:07:06,358] [main] Total files: 268 [testng] [2025-03-20 05:07:06,358] [main] Scan time: 1765.165 s (6586 ms/file) [testng] [2025-03-20 05:07:06,359] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-20 05:48:24,242] [pool-1-thread-1] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] 05:48:24,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:48:24,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:48:24,244 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-20_05-48-24.log] [testng] 05:48:24,244 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a6f0f00 - End of configuration. [testng] [2025-03-20 05:48:30,538] [pool-1-thread-12] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] 05:48:30,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:48:30,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:48:30,539 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-20_05-48-30.log] [testng] 05:48:30,539 |-INFO in ch.qos.logback.core.sift.SiftProcessor@129520eb - End of configuration. [testng] [2025-03-20 05:48:40,666] [pool-1-thread-11] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] 05:48:40,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:48:40,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:48:40,667 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-20_05-48-40.log] [testng] 05:48:40,668 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39200458 - End of configuration. [testng] [2025-03-20 05:48:49,099] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] 05:48:49,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:48:49,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:48:49,100 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-20_05-48-49.log] [testng] 05:48:49,100 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63a67831 - End of configuration. [testng] [2025-03-20 05:48:51,482] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] 05:48:51,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:48:51,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:48:51,483 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-20_05-48-51.log] [testng] 05:48:51,483 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b730b47 - End of configuration. [testng] [2025-03-20 05:48:53,720] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] 05:48:53,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:48:53,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:48:53,721 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-20_05-48-53.log] [testng] 05:48:53,721 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9377aed - End of configuration. [testng] [2025-03-20 05:49:02,503] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] 05:49:02,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:49:02,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:49:02,504 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-20_05-49-02.log] [testng] 05:49:02,505 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4486a3b3 - End of configuration. [testng] [2025-03-20 05:49:06,654] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] 05:49:06,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:49:06,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:49:06,656 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-20_05-49-06.log] [testng] 05:49:06,656 |-INFO in ch.qos.logback.core.sift.SiftProcessor@dc1c25b - End of configuration. [testng] [2025-03-20 05:49:09,642] [pool-1-thread-5] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] 05:49:09,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:49:09,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:49:09,643 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-20_05-49-09.log] [testng] 05:49:09,643 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c6e14e6 - End of configuration. [testng] [2025-03-20 05:49:20,514] [pool-1-thread-4] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] 05:49:20,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:49:20,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:49:20,515 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-20_05-49-20.log] [testng] 05:49:20,515 |-INFO in ch.qos.logback.core.sift.SiftProcessor@431a1e3 - End of configuration. [testng] [2025-03-20 05:49:34,153] [pool-1-thread-3] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] 05:49:34,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:49:34,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:49:34,154 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-20_05-49-34.log] [testng] 05:49:34,154 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27fa2adc - End of configuration. [testng] [2025-03-20 05:49:38,602] [pool-1-thread-2] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] 05:49:38,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:49:38,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:49:38,602 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-20_05-49-38.log] [testng] 05:49:38,603 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46a6a7f0 - End of configuration. [testng] [2025-03-20 05:50:19,591] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2025-03-20 05:50:21,365] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2025-03-20 05:50:26,439] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2025-03-20 05:50:28,972] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2025-03-20 05:50:44,802] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2025-03-20 05:50:50,526] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2025-03-20 05:51:01,425] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2025-03-20 05:51:10,566] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2025-03-20 05:51:11,220] [pool-1-thread-2] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2025-03-20 05:51:16,312] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2025-03-20 05:51:20,199] [pool-1-thread-7] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] [2025-03-20 05:51:32,833] [pool-1-thread-11] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2025-03-20 05:51:44,503] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2025-03-20 05:51:45,671] [pool-1-thread-8] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2025-03-20 05:51:54,372] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2025-03-20 05:51:59,596] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2025-03-20 05:52:05,923] [pool-1-thread-5] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2025-03-20 05:52:16,870] [pool-1-thread-12] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2025-03-20 05:52:24,167] [pool-1-thread-3] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] [2025-03-20 05:52:29,428] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2025-03-20 05:52:40,716] [pool-1-thread-1] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2025-03-20 05:52:43,928] [pool-1-thread-4] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2025-03-20 05:52:52,858] [pool-1-thread-9] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2025-03-20 05:53:01,384] [pool-1-thread-6] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2025-03-20 05:53:08,002] [pool-1-thread-11] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2025-03-20 05:53:11,886] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2025-03-20 05:53:25,484] [pool-1-thread-10] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2025-03-20 05:53:30,047] [pool-1-thread-3] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2025-03-20 05:53:45,658] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2025-03-20 05:53:57,543] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2025-03-20 05:54:08,548] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2025-03-20 05:54:18,688] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2025-03-20 05:54:33,260] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2025-03-20 05:54:36,167] [pool-1-thread-11] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2025-03-20 05:54:38,920] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2025-03-20 05:54:41,117] [pool-1-thread-8] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2025-03-20 05:54:54,034] [pool-1-thread-4] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2025-03-20 05:55:03,074] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2025-03-20 05:55:15,633] [pool-1-thread-6] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2025-03-20 05:55:20,019] [pool-1-thread-12] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2025-03-20 05:55:35,391] [pool-1-thread-5] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2025-03-20 05:55:39,720] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2025-03-20 05:55:42,668] [pool-1-thread-10] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2025-03-20 05:55:46,319] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2025-03-20 05:55:48,484] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2025-03-20 05:55:52,895] [pool-1-thread-3] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2025-03-20 05:56:02,860] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2025-03-20 05:56:07,967] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2025-03-20 05:56:19,115] [pool-1-thread-8] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2025-03-20 05:56:27,497] [pool-1-thread-11] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2025-03-20 05:56:38,639] [pool-1-thread-4] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2025-03-20 05:56:43,464] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2025-03-20 05:56:47,938] [pool-1-thread-5] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2025-03-20 05:56:54,444] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2025-03-20 05:56:58,053] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] [2025-03-20 05:57:02,408] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2025-03-20 05:57:12,472] [pool-1-thread-12] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2025-03-20 05:57:15,833] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2025-03-20 05:57:16,994] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2025-03-20 05:57:19,716] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] [2025-03-20 05:57:24,034] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2025-03-20 05:57:30,239] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2025-03-20 05:57:32,528] [pool-1-thread-9] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2025-03-20 05:57:38,875] [pool-1-thread-10] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2025-03-20 05:57:42,249] [pool-1-thread-1] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2025-03-20 05:57:48,982] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2025-03-20 05:57:52,562] [pool-1-thread-11] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2025-03-20 05:57:57,521] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2025-03-20 05:58:00,786] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2025-03-20 05:58:04,716] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2025-03-20 05:58:09,174] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2025-03-20 05:58:13,341] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2025-03-20 05:58:15,876] [pool-1-thread-10] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2025-03-20 05:58:18,137] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2025-03-20 05:58:20,646] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2025-03-20 05:58:23,078] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2025-03-20 05:58:25,491] [pool-1-thread-9] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2025-03-20 05:58:29,362] [pool-1-thread-5] Initializing /data/steve/FITS/M104.fits: [testng] [2025-03-20 05:58:35,537] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2025-03-20 05:58:39,239] [pool-1-thread-4] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2025-03-20 05:58:40,747] [pool-1-thread-8] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2025-03-20 05:58:41,789] [pool-1-thread-7] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] [2025-03-20 05:58:47,441] [pool-1-thread-2] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2025-03-20 05:58:54,179] [pool-1-thread-5] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2025-03-20 05:58:58,178] [pool-1-thread-12] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2025-03-20 05:59:07,125] [pool-1-thread-11] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2025-03-20 05:59:09,835] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2025-03-20 05:59:12,976] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2025-03-20 05:59:14,633] [pool-1-thread-1] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2025-03-20 05:59:17,523] [pool-1-thread-3] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2025-03-20 05:59:22,675] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2025-03-20 05:59:28,974] [pool-1-thread-9] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2025-03-20 05:59:37,998] [pool-1-thread-11] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2025-03-20 05:59:42,684] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2025-03-20 05:59:47,753] [pool-1-thread-4] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2025-03-20 05:59:59,570] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2025-03-20 06:00:03,851] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2025-03-20 06:00:06,572] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2025-03-20 06:00:09,535] [pool-1-thread-1] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2025-03-20 06:00:11,061] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2025-03-20 06:00:12,136] [pool-1-thread-9] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2025-03-20 06:00:20,617] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2025-03-20 06:00:24,207] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2025-03-20 06:00:26,988] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2025-03-20 06:00:30,516] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2025-03-20 06:00:31,928] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2025-03-20 06:00:39,343] [pool-1-thread-6] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2025-03-20 06:00:48,719] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2025-03-20 06:00:52,811] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] [2025-03-20 06:00:58,040] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2025-03-20 06:01:00,949] [pool-1-thread-3] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2025-03-20 06:01:04,732] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] [2025-03-20 06:01:11,109] [pool-1-thread-5] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2025-03-20 06:01:15,754] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2025-03-20 06:01:17,355] [pool-1-thread-11] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2025-03-20 06:01:21,812] [pool-1-thread-4] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2025-03-20 06:01:26,126] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2025-03-20 06:01:29,443] [pool-1-thread-2] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2025-03-20 06:01:40,807] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] [2025-03-20 06:01:44,709] [pool-1-thread-8] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2025-03-20 06:01:50,630] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2025-03-20 06:02:02,262] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2025-03-20 06:02:08,986] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2025-03-20 06:02:14,291] [pool-1-thread-10] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2025-03-20 06:02:25,991] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2025-03-20 06:02:29,256] [pool-1-thread-12] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2025-03-20 06:02:30,319] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2025-03-20 06:02:39,795] [pool-1-thread-5] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2025-03-20 06:02:45,085] [pool-1-thread-2] Initializing /data/steve/Targa/Test.TGA: [testng] [2025-03-20 06:02:51,865] [pool-1-thread-3] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2025-03-20 06:02:55,355] [pool-1-thread-8] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2025-03-20 06:03:08,361] [pool-1-thread-9] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2025-03-20 06:03:13,913] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2025-03-20 06:03:24,893] [pool-1-thread-4] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2025-03-20 06:03:40,916] [pool-1-thread-6] Initializing /data/steve/FITS/M13.fits: [testng] [2025-03-20 06:03:43,897] [pool-1-thread-11] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2025-03-20 06:03:45,141] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2025-03-20 06:03:49,288] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2025-03-20 06:03:58,928] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2025-03-20 06:04:08,545] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2025-03-20 06:04:18,133] [pool-1-thread-5] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2025-03-20 06:04:21,209] [pool-1-thread-1] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2025-03-20 06:04:34,287] [pool-1-thread-11] Initializing /data/steve/TIFF/HAFF SEM: [testng] [2025-03-20 06:04:41,941] [pool-1-thread-6] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2025-03-20 06:04:43,728] [pool-1-thread-8] Initializing /data/steve/FITS/M51.fits: [testng] [2025-03-20 06:04:47,928] [pool-1-thread-2] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2025-03-20 06:04:59,457] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2025-03-20 06:05:02,850] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 88 minutes 22 seconds Finished: SUCCESS