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Started by upstream project "BIOFORMATS-test-repo" build number 385 originally caused by: Started by upstream project "Trigger" build number 406 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins13771710412807061184.sh + '[' psd = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_60980_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 12:36:01,883 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 12:36:01,884 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - No custom configurators were discovered as a service. [testng] 12:36:01,884 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 12:36:01,885 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 12:36:01,885 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 12:36:01,885 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 12:36:01,886 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 12:36:01,886 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 12:36:01,886 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 12:36:01,887 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 12:36:01,887 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 12:36:01,887 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 12:36:02,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 12:36:02,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 12:36:02,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 12:36:02,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 12:36:02,065 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 12:36:02,065 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 12:36:02,065 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 12:36:02,066 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 12:36:02,066 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@4310d43 - End of configuration. [testng] 12:36:02,067 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1b11171f - Registering current configuration as safe fallback point [testng] 12:36:02,067 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 181 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-20 12:36:02,075] [main] java.version = 21 [testng] 12:36:02,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 12:36:02,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:36:02,118 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-20_12-36-02.log] [testng] 12:36:02,119 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69504ae9 - End of configuration. [testng] [2025-03-20 12:36:02,121] [main] testng.directory = /data [testng] [2025-03-20 12:36:02,121] [main] testng.configDirectory = /config [testng] [2025-03-20 12:36:02,228] [main] testng.multiplier = 1.0 [testng] [2025-03-20 12:36:02,229] [main] testng.in-memory = false [testng] [2025-03-20 12:36:02,229] [main] testng.allow-missing = false [testng] [2025-03-20 12:36:02,229] [main] user.language = en [testng] [2025-03-20 12:36:02,229] [main] user.country = ${user.country} [testng] [2025-03-20 12:36:02,229] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-20 12:36:03,089] [main] ---------------------------------------- [testng] [2025-03-20 12:36:03,089] [main] Total files: 18 [testng] [2025-03-20 12:36:03,089] [main] Scan time: 0.86 s (47 ms/file) [testng] [2025-03-20 12:36:03,090] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-20 12:36:34,495] [pool-1-thread-1] Initializing /data/qa-4117/caspase gel-1.psd: [testng] 12:36:34,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 12:36:34,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:36:34,498 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-20_12-36-34.log] [testng] 12:36:34,499 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ee6e321 - End of configuration. [testng] [2025-03-20 12:36:36,046] [pool-1-thread-12] Initializing /data/ascb/thin&thick fill.2.psd: [testng] 12:36:36,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 12:36:36,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:36:36,047 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-20_12-36-36.log] [testng] 12:36:36,047 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c364cec - End of configuration. [testng] [2025-03-20 12:36:37,445] [pool-1-thread-11] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] 12:36:37,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 12:36:37,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:36:37,447 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-20_12-36-37.log] [testng] 12:36:37,447 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e83da82 - End of configuration. [testng] [2025-03-20 12:36:38,946] [pool-1-thread-10] Initializing /data/misc/vig_drawing_1.psd: [testng] 12:36:38,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 12:36:38,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:36:38,948 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-20_12-36-38.log] [testng] 12:36:38,948 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27b7fd8d - End of configuration. [testng] [2025-03-20 12:36:40,286] [pool-1-thread-9] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] 12:36:40,286 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 12:36:40,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:36:40,288 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-20_12-36-40.log] [testng] 12:36:40,288 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a334a43 - End of configuration. [testng] [2025-03-20 12:36:41,751] [pool-1-thread-8] Initializing /data/misc/venus_composite_8bit.psd: [testng] 12:36:41,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 12:36:41,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:36:41,752 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-20_12-36-41.log] [testng] 12:36:41,753 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1891e8b7 - End of configuration. [testng] [2025-03-20 12:36:43,240] [pool-1-thread-7] Initializing /data/misc/venus_composite.psd: [testng] 12:36:43,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 12:36:43,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:36:43,241 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-20_12-36-43.log] [testng] 12:36:43,241 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f1bfb64 - End of configuration. [testng] [2025-03-20 12:36:44,863] [pool-1-thread-6] Initializing /data/ascb/607x.psd: [testng] 12:36:44,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 12:36:44,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:36:44,864 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-20_12-36-44.log] [testng] 12:36:44,864 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43043779 - End of configuration. [testng] [2025-03-20 12:36:46,308] [pool-1-thread-5] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] 12:36:46,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 12:36:46,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:36:46,309 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-20_12-36-46.log] [testng] 12:36:46,309 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fdc01c3 - End of configuration. [testng] [2025-03-20 12:36:47,640] [pool-1-thread-4] Initializing /data/big-images/8kx8k.psd: [testng] 12:36:47,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 12:36:47,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:36:47,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-20_12-36-47.log] [testng] 12:36:47,642 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c47a0c - End of configuration. [testng] [2025-03-20 12:36:48,949] [pool-1-thread-3] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] 12:36:48,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 12:36:48,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:36:48,950 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-20_12-36-48.log] [testng] 12:36:48,951 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25761f12 - End of configuration. [testng] [2025-03-20 12:36:50,470] [pool-1-thread-2] Initializing /data/ascb/423.psd: [testng] 12:36:50,470 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 12:36:50,470 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:36:50,471 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-20_12-36-50.log] [testng] 12:36:50,472 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d4e36e1 - End of configuration. [testng] [2025-03-20 12:37:03,894] [pool-1-thread-10] Initializing /data/misc/glossy_orbs.psd: [testng] [2025-03-20 12:37:05,310] [pool-1-thread-7] Initializing /data/misc/smilie.psd: [testng] [2025-03-20 12:37:06,655] [pool-1-thread-9] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] [2025-03-20 12:37:07,970] [pool-1-thread-3] Initializing /data/cris/house.tif: [testng] [2025-03-20 12:37:12,406] [pool-1-thread-8] Initializing /data/misc/glossy_buttons.psd: [testng] [2025-03-20 12:37:13,751] [pool-1-thread-11] Initializing /data/simon/colour_separated_image.psd: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 42 seconds Finished: SUCCESS