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Started by upstream project "BIOFORMATS-test-repo" build number 386 originally caused by: Started by upstream project "Trigger" build number 408 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins10793938499304676001.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_61034_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 22:28:48,991 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 22:28:48,993 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - No custom configurators were discovered as a service. [testng] 22:28:48,993 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 22:28:48,994 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 22:28:48,995 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 22:28:48,995 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 22:28:48,995 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 22:28:48,995 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 22:28:48,996 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 22:28:48,996 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 22:28:48,997 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 22:28:48,997 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 22:28:49,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 22:28:49,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 22:28:49,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 22:28:49,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 22:28:49,213 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 22:28:49,213 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 22:28:49,213 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 22:28:49,214 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 22:28:49,214 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@47d9a273 - End of configuration. [testng] 22:28:49,215 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4659191b - Registering current configuration as safe fallback point [testng] 22:28:49,215 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 219 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-20 22:28:49,224] [main] java.version = 21 [testng] 22:28:49,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 22:28:49,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 22:28:49,270 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-20_22-28-49.log] [testng] 22:28:49,272 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69504ae9 - End of configuration. [testng] [2025-03-20 22:28:49,273] [main] testng.directory = /data [testng] [2025-03-20 22:28:49,273] [main] testng.configDirectory = /config [testng] [2025-03-20 22:28:49,282] [main] testng.multiplier = 1.0 [testng] [2025-03-20 22:28:49,282] [main] testng.in-memory = false [testng] [2025-03-20 22:28:49,282] [main] testng.allow-missing = false [testng] [2025-03-20 22:28:49,282] [main] user.language = en [testng] [2025-03-20 22:28:49,282] [main] user.country = ${user.country} [testng] [2025-03-20 22:28:49,282] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-20 22:30:06,217] [main] ---------------------------------------- [testng] [2025-03-20 22:30:06,217] [main] Total files: 259 [testng] [2025-03-20 22:30:06,217] [main] Scan time: 76.935 s (297 ms/file) [testng] [2025-03-20 22:30:06,218] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-20 22:55:31,131] [pool-1-thread-1] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] 22:55:31,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 22:55:31,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 22:55:31,134 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-20_22-55-31.log] [testng] 22:55:31,134 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72d07992 - End of configuration. [testng] [2025-03-20 22:55:39,037] [pool-1-thread-12] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] 22:55:39,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 22:55:39,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 22:55:39,038 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-20_22-55-39.log] [testng] 22:55:39,039 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3dcf08ec - End of configuration. [testng] [2025-03-20 22:55:40,945] [pool-1-thread-11] Initializing /data/johannes/step1.bmp: [testng] 22:55:40,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 22:55:40,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 22:55:40,946 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-20_22-55-40.log] [testng] 22:55:40,946 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35027bb6 - End of configuration. [testng] [2025-03-20 22:55:41,332] [pool-1-thread-10] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] 22:55:41,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 22:55:41,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 22:55:41,333 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-20_22-55-41.log] [testng] 22:55:41,333 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28a94273 - End of configuration. [testng] [2025-03-20 22:55:43,067] [pool-1-thread-9] Initializing /data/johannes/step3.bmp: [testng] 22:55:43,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 22:55:43,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 22:55:43,068 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-20_22-55-43.log] [testng] 22:55:43,068 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a18e47 - End of configuration. [testng] [2025-03-20 22:55:43,460] [pool-1-thread-8] Initializing /data/brian/Kaede15.oib: [testng] 22:55:43,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 22:55:43,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 22:55:43,461 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-20_22-55-43.log] [testng] 22:55:43,461 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ba6191a - End of configuration. [testng] [2025-03-20 22:55:45,537] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] 22:55:45,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 22:55:45,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 22:55:45,538 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-20_22-55-45.log] [testng] 22:55:45,538 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ac4219 - End of configuration. [testng] [2025-03-20 22:55:47,319] [pool-1-thread-6] Initializing /data/molly/11OCT3.OIF: [testng] 22:55:47,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 22:55:47,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 22:55:47,320 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-20_22-55-47.log] [testng] 22:55:47,321 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55d3b552 - End of configuration. [testng] [2025-03-20 22:59:00,352] [pool-1-thread-5] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] 22:59:00,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 22:59:00,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 22:59:00,353 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-20_22-59-00.log] [testng] 22:59:00,354 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c1a9a74 - End of configuration. [testng] [2025-03-20 22:59:06,539] [pool-1-thread-4] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] 22:59:06,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 22:59:06,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 22:59:06,540 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-20_22-59-06.log] [testng] 22:59:06,541 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cbcfc18 - End of configuration. [testng] [2025-03-20 22:59:08,985] [pool-1-thread-3] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] 22:59:08,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 22:59:08,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 22:59:08,986 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-20_22-59-08.log] [testng] 22:59:08,987 |-INFO in ch.qos.logback.core.sift.SiftProcessor@118ef4b4 - End of configuration. [testng] [2025-03-20 22:59:14,813] [pool-1-thread-2] Initializing /data/dan/outerEV1solu6new.oib: [testng] 22:59:14,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 22:59:14,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 22:59:14,814 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-20_22-59-14.log] [testng] 22:59:14,815 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cf61f86 - End of configuration. [testng] [2025-03-20 22:59:25,393] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2025-03-20 22:59:28,335] [pool-1-thread-11] Initializing /data/brian/PA-GFP-3.oib: [testng] [2025-03-20 22:59:38,583] [pool-1-thread-4] Initializing /data/glen/simulstack.oif: [testng] [2025-03-20 22:59:53,291] [pool-1-thread-10] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2025-03-20 23:00:00,616] [pool-1-thread-2] Initializing /data/yoshihito/XY.oib: [testng] [2025-03-20 23:00:03,493] [pool-1-thread-8] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2025-03-20 23:00:06,329] [pool-1-thread-12] Initializing /data/glen/singleseqframe.oib: [testng] [2025-03-20 23:00:09,344] [pool-1-thread-7] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2025-03-20 23:00:18,416] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] [2025-03-20 23:00:22,249] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2025-03-20 23:00:33,024] [pool-1-thread-5] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2025-03-20 23:00:51,508] [pool-1-thread-2] Initializing /data/glen/seqlinestack.oib: [testng] [2025-03-20 23:00:54,485] [pool-1-thread-12] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2025-03-20 23:00:57,216] [pool-1-thread-8] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2025-03-20 23:00:59,826] [pool-1-thread-7] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2025-03-20 23:01:09,683] [pool-1-thread-5] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] [2025-03-20 23:01:14,194] [pool-1-thread-11] Initializing /data/tom/zseries-test.oib: [testng] [2025-03-20 23:01:17,249] [pool-1-thread-9] Initializing /data/glen/singlesimul.oib: [testng] [2025-03-20 23:01:28,040] [pool-1-thread-7] Initializing /data/glen/singleseqframe.oif: [testng] [2025-03-20 23:01:32,360] [pool-1-thread-12] Initializing /data/molly/11OCT6.OIF: [testng] [2025-03-20 23:02:36,949] [pool-1-thread-8] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2025-03-20 23:02:39,801] [pool-1-thread-2] Initializing /data/jae/Image0001.oib: [testng] [2025-03-20 23:02:48,742] [pool-1-thread-9] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2025-03-20 23:03:05,356] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2025-03-20 23:03:12,947] [pool-1-thread-2] Initializing /data/aryeh/1h_after_pdt.oib: [testng] [2025-03-20 23:03:20,453] [pool-1-thread-8] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2025-03-20 23:03:38,753] [pool-1-thread-11] Initializing /data/stefan/yc2_live-03.oib: [testng] [2025-03-20 23:03:59,916] [pool-1-thread-11] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] [2025-03-20 23:04:05,931] [pool-1-thread-2] Initializing /data/stefan/cytosol_03e.oib: [testng] [2025-03-20 23:04:19,695] [pool-1-thread-11] Initializing /data/david/Image0016.oib: [testng] [2025-03-20 23:04:29,945] [pool-1-thread-2] Initializing /data/johannes/step5b.bmp: [testng] [2025-03-20 23:04:37,612] [pool-1-thread-2] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2025-03-20 23:04:41,037] [pool-1-thread-5] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2025-03-20 23:04:42,694] [pool-1-thread-11] Initializing /data/satoshi/60x_5x_1.oif: [testng] [2025-03-20 23:05:01,196] [pool-1-thread-5] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2025-03-20 23:05:03,864] [pool-1-thread-2] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2025-03-20 23:05:08,754] [pool-1-thread-5] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2025-03-20 23:05:22,594] [pool-1-thread-2] Initializing /data/tom/RGB-1.avi: [testng] [2025-03-20 23:05:25,403] [pool-1-thread-5] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2025-03-20 23:05:28,462] [pool-1-thread-7] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2025-03-20 23:05:36,279] [pool-1-thread-2] Initializing /data/chris/missegragation-15.oib: [testng] [2025-03-20 23:05:44,704] [pool-1-thread-5] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] [2025-03-20 23:05:48,907] [pool-1-thread-7] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2025-03-20 23:05:57,074] [pool-1-thread-2] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2025-03-20 23:06:07,378] [pool-1-thread-5] Initializing /data/brian/Lambda10nm.oib: [testng] [2025-03-20 23:06:11,488] [pool-1-thread-7] Initializing /data/johannes/step4b.bmp: [testng] [2025-03-20 23:06:18,403] [pool-1-thread-7] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2025-03-20 23:06:27,791] [pool-1-thread-2] Initializing /data/monica/Image0056.oif: [testng] [2025-03-20 23:06:31,563] [pool-1-thread-5] Initializing /data/glen/singlesimul.oif: [testng] [2025-03-20 23:06:43,036] [pool-1-thread-7] Initializing /data/brian/CagedATP CaG7.oib: [testng] [2025-03-20 23:06:57,169] [pool-1-thread-7] Initializing /data/pedro/plv-test.oib: [testng] [2025-03-20 23:07:12,277] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2025-03-20 23:07:30,081] [pool-1-thread-7] Initializing /data/marc/V0606J.oib: [testng] [2025-03-20 23:07:57,129] [pool-1-thread-7] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2025-03-20 23:08:11,781] [pool-1-thread-7] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2025-03-20 23:08:26,835] [pool-1-thread-7] Initializing /data/glen/LUT issue/60x11.oif: [testng] [2025-03-20 23:08:50,285] [pool-1-thread-3] Initializing /data/johannes/step4.bmp: [testng] [2025-03-20 23:08:55,635] [pool-1-thread-2] Initializing /data/marc/V0606L.oib: [testng] [2025-03-20 23:08:58,524] [pool-1-thread-3] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] [2025-03-20 23:09:05,065] [pool-1-thread-5] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2025-03-20 23:09:13,885] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2025-03-20 23:09:19,930] [pool-1-thread-5] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] [2025-03-20 23:09:25,839] [pool-1-thread-2] Initializing /data/simon/never_worked.oib: [testng] [2025-03-20 23:09:33,398] [pool-1-thread-3] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2025-03-20 23:09:41,341] [pool-1-thread-2] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2025-03-20 23:09:50,238] [pool-1-thread-3] Initializing /data/glen/4205basal106072.oif: [testng] [2025-03-20 23:10:08,521] [pool-1-thread-10] Initializing /data/brian/CFP-GFP2.oib: [testng] [2025-03-20 23:10:15,052] [pool-1-thread-2] Initializing /data/michael/CELL3.oib: [testng] [2025-03-20 23:10:22,640] [pool-1-thread-10] Initializing /data/glen/simulstack.oib: [testng] [2025-03-20 23:10:28,864] [pool-1-thread-2] Initializing /data/molly/11OCT11.OIF: [testng] [2025-03-20 23:11:36,168] [pool-1-thread-10] Initializing /data/christian/20min.oif: [testng] [2025-03-20 23:11:42,676] [pool-1-thread-5] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2025-03-20 23:12:00,267] [pool-1-thread-5] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2025-03-20 23:12:19,113] [pool-1-thread-5] Initializing /data/aryeh/030408 2 1.oib: [testng] [2025-03-20 23:12:37,758] [pool-1-thread-5] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2025-03-20 23:12:56,545] [pool-1-thread-5] Initializing /data/david/Image0016.oif: [testng] [2025-03-20 23:13:10,112] [pool-1-thread-10] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] [2025-03-20 23:13:29,055] [pool-1-thread-10] Initializing /data/molly/11OCT7.OIF: [testng] [2025-03-20 23:17:11,075] [pool-1-thread-11] Initializing /data/simon/used_to_work.oib: [testng] [2025-03-20 23:17:30,319] [pool-1-thread-11] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2025-03-20 23:18:25,170] [pool-1-thread-5] Initializing /data/brian/LILY POLLEN.oib: [testng] [2025-03-20 23:18:43,975] [pool-1-thread-5] Initializing /data/glen/111407.oif: [testng] [2025-03-20 23:30:11,725] [pool-1-thread-1] Initializing /data/brian/lambda02nm.oib: [testng] [2025-03-20 23:30:32,723] [pool-1-thread-1] Initializing /data/glen/Null file/test no change.oif: [testng] [2025-03-20 23:32:55,174] [pool-1-thread-1] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2025-03-20 23:33:11,391] [pool-1-thread-1] Initializing /data/stefan/cytosol_01a.oif: [testng] [2025-03-20 23:42:31,269] [pool-1-thread-8] Initializing /data/yoshihito/XY.oif: [testng] [2025-03-20 23:44:14,846] [pool-1-thread-8] Initializing /data/molly/11OCT8.OIF: [testng] [2025-03-20 23:55:33,431] [pool-1-thread-4] Initializing /data/molly/11OCT9.OIF: [testng] [2025-03-20 23:58:58,219] [pool-1-thread-9] Initializing /data/qa-17748/Image0098.oib: [testng] [2025-03-20 23:59:18,491] [pool-1-thread-9] Initializing /data/glen/notsaturated.oib: [testng] [2025-03-20 23:59:40,934] [pool-1-thread-9] Initializing /data/glen/Null file/test change.oif: [testng] [2025-03-21 00:02:27,976] [pool-1-thread-9] Initializing /data/allan/62909#1.oib: [testng] [2025-03-21 00:02:52,853] [pool-1-thread-9] Initializing /data/molly/11OCT4.OIF: [testng] [2025-03-21 00:04:23,544] [pool-1-thread-7] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2025-03-21 00:04:46,284] [pool-1-thread-7] Initializing /data/glen/seqlinestack.oif: [testng] 00:17:58,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:17:58,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:17:58,090 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-21_00-17-58.log] [testng] 00:17:58,090 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60f996ae - End of configuration. [testng] 00:18:42,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:18:42,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:18:42,988 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-21_00-18-42.log] [testng] 00:18:42,988 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27cce5bd - End of configuration. [testng] [2025-03-21 00:20:50,161] [pool-1-thread-5] Initializing /data/karl/Image0009.oib: [testng] [2025-03-21 00:21:07,536] [pool-1-thread-5] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2025-03-21 00:23:28,944] [pool-1-thread-5] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2025-03-21 00:23:47,820] [pool-1-thread-5] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2025-03-21 00:26:06,620] [pool-1-thread-10] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] [2025-03-21 00:26:48,097] [pool-1-thread-12] Initializing /data/sten/01.oib: [testng] [2025-03-21 00:27:05,760] [pool-1-thread-12] Initializing /data/stefan/cytosol_08b.oif: [testng] 00:30:55,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:30:55,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:55,250 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-21_00-30-55.log] [testng] 00:30:55,250 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4541b525 - End of configuration. [testng] [2025-03-21 00:39:06,856] [pool-1-thread-5] Initializing /data/aryeh/1h.oib: [testng] [2025-03-21 00:39:33,235] [pool-1-thread-5] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] [2025-03-21 00:43:43,769] [pool-1-thread-2] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2025-03-21 00:44:27,231] [pool-1-thread-2] Initializing /data/qa-17748/Image0079.oib: [testng] [2025-03-21 00:44:33,423] [pool-1-thread-5] Initializing /data/glen/singleseqline.oib: [testng] [2025-03-21 00:45:03,429] [pool-1-thread-5] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2025-03-21 00:45:07,142] [pool-1-thread-2] Initializing /data/aryeh/control_test.oib: [testng] [2025-03-21 00:45:41,257] [pool-1-thread-5] Initializing /data/johannes/Image0010/Image0010.oif: [testng] [2025-03-21 00:46:03,801] [pool-1-thread-2] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2025-03-21 00:46:27,234] [pool-1-thread-2] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2025-03-21 00:46:44,165] [pool-1-thread-2] Initializing /data/molly/11OCT10.OIF: [testng] 00:48:42,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:48:42,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:48:42,889 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-21_00-48-42.log] [testng] 00:48:42,889 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b2997ba - End of configuration. [testng] [2025-03-21 00:51:31,508] [pool-1-thread-3] Initializing /data/brian/FLIP.oib: [testng] [2025-03-21 00:51:47,617] [pool-1-thread-3] Initializing /data/molly/11OCT5.OIF: [testng] [2025-03-21 00:56:08,601] [pool-1-thread-5] Initializing /data/yasunori/series_1.oib: [testng] [2025-03-21 00:56:28,349] [pool-1-thread-5] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2025-03-21 00:56:45,036] [pool-1-thread-5] Initializing /data/johannes/step2.bmp: [testng] [2025-03-21 00:56:52,124] [pool-1-thread-5] Initializing /data/kay/IM2pg.oib: [testng] [2025-03-21 00:57:08,890] [pool-1-thread-5] Initializing /data/glen/singleseqline.oif: [testng] [2025-03-21 00:59:52,148] [pool-1-thread-5] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2025-03-21 01:09:48,817] [pool-1-thread-10] Initializing /data/molly/11OCT2.OIF: [testng] 01:11:17,521 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:11:17,521 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:11:17,521 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-21_01-11-17.log] [testng] 01:11:17,522 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20929899 - End of configuration. [testng] [2025-03-21 01:12:26,384] [pool-1-thread-11] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] [2025-03-21 01:14:56,133] [pool-1-thread-8] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2025-03-21 01:15:15,515] [pool-1-thread-8] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2025-03-21 01:20:22,797] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2025-03-21 01:20:48,922] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2025-03-21 01:21:12,702] [pool-1-thread-8] Initializing /data/glen/Image0002.oif: [testng] [2025-03-21 01:23:39,714] [pool-1-thread-9] Initializing /data/glen/notsaturated.oif: [testng] [2025-03-21 01:49:56,123] [pool-1-thread-7] Initializing /data/francesco/fGfp.c15.oib: [testng] [2025-03-21 01:50:18,567] [pool-1-thread-7] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] 02:01:46,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:01:46,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:01:46,437 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-21_02-01-46.log] [testng] 02:01:46,438 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cb1c34b - End of configuration. [testng] 02:15:41,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:15:41,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:15:41,189 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-21_02-15-41.log] [testng] 02:15:41,189 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dc139b6 - End of configuration. [testng] 02:34:03,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:34:03,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:34:03,015 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-21_02-34-03.log] [testng] 02:34:03,015 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79f918f4 - End of configuration. [testng] 03:34:27,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:34:27,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:34:27,608 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-21_03-34-27.log] [testng] 03:34:27,608 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ddae42a - End of configuration. [testng] 04:10:42,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:10:42,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:10:42,131 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-21_04-10-42.log] [testng] 04:10:42,132 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42d89d8 - End of configuration. [testng] 05:43:10,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:43:10,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:43:10,641 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-21_05-43-10.log] [testng] 05:43:10,641 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e81cf2d - End of configuration. [testng] 05:50:51,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:50:51,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:50:51,115 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-21_05-50-51.log] [testng] 05:50:51,115 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d7cfaa7 - End of configuration. [testng] 06:18:16,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:18:16,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:18:16,556 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-21_06-18-16.log] [testng] 06:18:16,556 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71ef979e - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 469 minutes 30 seconds Finished: SUCCESS