Skip to content

Console Output

Started by upstream project "BIOFORMATS-test-repo" build number 43
originally caused by:
 Started by upstream project "Trigger" build number 50
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins7026372001509117057.sh
+ '[' khoros = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_6106_merge_ci -v /uod/idr/repos/curated/khoros:/data -v /uod/idr-scratch/merge-ci/curated/khoros:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 01:42:38,067 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:42:38,068 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
   [testng] 01:42:38,068 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:42:38,069 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:42:38,070 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:42:38,070 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:42:38,070 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:42:38,070 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:42:38,071 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:42:38,071 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:42:38,072 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:42:38,072 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:42:38,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:42:38,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:42:38,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:42:38,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:42:38,279 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:42:38,279 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:42:38,279 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:42:38,279 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:42:38,279 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
   [testng] 01:42:38,280 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
   [testng] 01:42:38,280 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 209 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-04-24 01:42:38,288] [main] java.version = 17.0.2
   [testng] 01:42:38,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:42:38,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:38,332 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-24_01-42-38.log]
   [testng] 01:42:38,333 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
   [testng] [2024-04-24 01:42:38,335] [main] testng.directory = /data
   [testng] [2024-04-24 01:42:38,335] [main] testng.configDirectory = /config
   [testng] [2024-04-24 01:42:38,343] [main] testng.multiplier = 1.0
   [testng] [2024-04-24 01:42:38,344] [main] testng.in-memory = false
   [testng] [2024-04-24 01:42:38,344] [main] testng.allow-missing = false
   [testng] [2024-04-24 01:42:38,344] [main] user.language = en
   [testng] [2024-04-24 01:42:38,344] [main] user.country = ${user.country}
   [testng] [2024-04-24 01:42:38,344] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-04-24 01:42:38,630] [main] ----------------------------------------
   [testng] [2024-04-24 01:42:38,630] [main] Total files: 10
   [testng] [2024-04-24 01:42:38,630] [main] Scan time: 0.285 s (28 ms/file)
   [testng] [2024-04-24 01:42:38,630] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 10 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-04-24 01:42:39,239] [pool-1-thread-1] Initializing /data/samples/airport.xv: 
   [testng] 01:42:39,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:42:39,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:39,241 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-24_01-42-39.log]
   [testng] 01:42:39,242 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b82a921 - End of configuration.
   [testng] [2024-04-24 01:42:39,263] [pool-1-thread-10] Initializing /data/samples/head8bit.tif: 
   [testng] 01:42:39,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:42:39,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:39,264 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-24_01-42-39.log]
   [testng] 01:42:39,264 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bea5deb - End of configuration.
   [testng] [2024-04-24 01:42:39,333] [pool-1-thread-9] Initializing /data/samples/ball.xv: 
   [testng] 01:42:39,333 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:42:39,333 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:39,334 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-24_01-42-39.log]
   [testng] 01:42:39,335 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ad0255f - End of configuration.
   [testng] [2024-04-24 01:42:39,346] [pool-1-thread-8] Initializing /data/samples/lizard.xv: 
   [testng] 01:42:39,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:42:39,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:39,347 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-24_01-42-39.log]
   [testng] 01:42:39,348 |-INFO in ch.qos.logback.core.sift.SiftProcessor@756ab44c - End of configuration.
   [testng] [2024-04-24 01:42:39,357] [pool-1-thread-7] Initializing /data/samples/xray.xv: 
   [testng] 01:42:39,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:42:39,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:39,358 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-24_01-42-39.log]
   [testng] 01:42:39,359 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bd9bf62 - End of configuration.
   [testng] [2024-04-24 01:42:39,368] [pool-1-thread-6] Initializing /data/samples/kitten.xv: 
   [testng] 01:42:39,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:42:39,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:39,369 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-24_01-42-39.log]
   [testng] 01:42:39,370 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1996cd6c - End of configuration.
   [testng] [2024-04-24 01:42:39,380] [pool-1-thread-5] Initializing /data/samples/wolf.xv: 
   [testng] 01:42:39,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:42:39,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:39,382 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-24_01-42-39.log]
   [testng] 01:42:39,382 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57281e41 - End of configuration.
   [testng] [2024-04-24 01:42:39,393] [pool-1-thread-4] Initializing /data/samples/moon.xv: 
   [testng] 01:42:39,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:42:39,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:39,394 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-24_01-42-39.log]
   [testng] 01:42:39,394 |-INFO in ch.qos.logback.core.sift.SiftProcessor@124b54a8 - End of configuration.
   [testng] [2024-04-24 01:42:39,405] [pool-1-thread-3] Initializing /data/samples/lablabel.xv: 
   [testng] 01:42:39,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:42:39,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:39,406 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-24_01-42-39.log]
   [testng] 01:42:39,407 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b944221 - End of configuration.
   [testng] [2024-04-24 01:42:39,419] [pool-1-thread-2] Initializing /data/samples/head.xv: 
   [testng] 01:42:39,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:42:39,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:39,420 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-24_01-42-39.log]
   [testng] 01:42:39,421 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d72df82 - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 530, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 7 seconds
Finished: SUCCESS