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Started by upstream project "BIOFORMATS-test-repo" build number 386 originally caused by: Started by upstream project "Trigger" build number 408 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@16 [BIOFORMATS-test-folder@16] $ /bin/bash -xe /tmp/jenkins14843993455822935425.sh + '[' avi = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_61078_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 23:05:34,606 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 23:05:34,607 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - No custom configurators were discovered as a service. [testng] 23:05:34,607 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 23:05:34,608 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 23:05:34,609 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 23:05:34,609 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 23:05:34,610 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 23:05:34,610 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 23:05:34,610 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 23:05:34,611 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 23:05:34,611 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 23:05:34,611 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 23:05:34,786 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 23:05:34,786 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 23:05:34,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 23:05:34,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 23:05:34,821 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 23:05:34,821 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 23:05:34,821 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 23:05:34,821 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 23:05:34,822 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@4310d43 - End of configuration. [testng] 23:05:34,822 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1b11171f - Registering current configuration as safe fallback point [testng] 23:05:34,822 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 212 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-20 23:05:34,832] [main] java.version = 21 [testng] 23:05:34,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 23:05:34,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:05:34,884 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-20_23-05-34.log] [testng] 23:05:34,886 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69504ae9 - End of configuration. [testng] [2025-03-20 23:05:34,887] [main] testng.directory = /data [testng] [2025-03-20 23:05:34,888] [main] testng.configDirectory = /config [testng] [2025-03-20 23:05:34,898] [main] testng.multiplier = 1.0 [testng] [2025-03-20 23:05:34,899] [main] testng.in-memory = false [testng] [2025-03-20 23:05:34,899] [main] testng.allow-missing = false [testng] [2025-03-20 23:05:34,899] [main] user.language = en [testng] [2025-03-20 23:05:34,899] [main] user.country = ${user.country} [testng] [2025-03-20 23:05:34,899] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-20 23:05:50,576] [main] ---------------------------------------- [testng] [2025-03-20 23:05:50,576] [main] Total files: 40 [testng] [2025-03-20 23:05:50,576] [main] Scan time: 15.677 s (391 ms/file) [testng] [2025-03-20 23:05:50,577] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 38 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-20 23:07:17,367] [pool-1-thread-1] Initializing /data/roger/op9middle40x.lsm movie 4.avi: [testng] 23:07:17,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 23:07:17,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:07:17,369 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-20_23-07-17.log] [testng] 23:07:17,369 |-INFO in ch.qos.logback.core.sift.SiftProcessor@973f6a9 - End of configuration. [testng] [2025-03-20 23:07:18,739] [pool-1-thread-12] Initializing /data/curtis/mri-stack-ij-new.avi: [testng] 23:07:18,739 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 23:07:18,739 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:07:18,740 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-20_23-07-18.log] [testng] 23:07:18,741 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3322f24 - End of configuration. [testng] [2025-03-20 23:07:20,097] [pool-1-thread-11] Initializing /data/roger/spheroid1.lsm movie.avi: [testng] 23:07:20,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 23:07:20,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:07:20,098 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-20_23-07-20.log] [testng] 23:07:20,099 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44f9b6a4 - End of configuration. [testng] [2025-03-20 23:07:21,481] [pool-1-thread-10] Initializing /data/chip_avi/Level003-DB-089.avi: [testng] 23:07:21,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 23:07:21,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:07:21,482 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-20_23-07-21.log] [testng] 23:07:21,482 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20b76837 - End of configuration. [testng] [2025-03-20 23:07:22,997] [pool-1-thread-9] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: [testng] 23:07:22,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 23:07:22,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:07:22,999 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-20_23-07-22.log] [testng] 23:07:23,000 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6486f8a9 - End of configuration. [testng] [2025-03-20 23:07:24,245] [pool-1-thread-8] Initializing /data/chip_avi/Level004-WA-116.avi: [testng] 23:07:24,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 23:07:24,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:07:24,246 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-20_23-07-24.log] [testng] 23:07:24,246 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19fa08ab - End of configuration. [testng] [2025-03-20 23:07:25,476] [pool-1-thread-7] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: [testng] 23:07:25,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 23:07:25,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:07:25,477 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-20_23-07-25.log] [testng] 23:07:25,477 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dc3c81d - End of configuration. [testng] [2025-03-20 23:07:26,709] [pool-1-thread-6] Initializing /data/simon/24_bit_problem.avi: [testng] 23:07:26,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 23:07:26,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:07:26,710 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-20_23-07-26.log] [testng] 23:07:26,710 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b7a53d7 - End of configuration. [testng] [2025-03-20 23:07:27,985] [pool-1-thread-5] Initializing /data/chip_avi/Level002-DB-090.avi: [testng] 23:07:27,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 23:07:27,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:07:27,986 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-20_23-07-27.log] [testng] 23:07:27,986 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48cf9604 - End of configuration. [testng] [2025-03-20 23:07:29,117] [pool-1-thread-4] Initializing /data/roger/op9middle40x.lsm movie 3.avi: [testng] 23:07:29,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 23:07:29,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:07:29,118 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-20_23-07-29.log] [testng] 23:07:29,118 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d6aec0e - End of configuration. [testng] [2025-03-20 23:07:30,284] [pool-1-thread-3] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: [testng] 23:07:30,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 23:07:30,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:07:30,286 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-20_23-07-30.log] [testng] 23:07:30,286 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53d3b9c0 - End of configuration. [testng] [2025-03-20 23:07:31,453] [pool-1-thread-2] Initializing /data/qa-5019/nemo-2_1_.avi: [testng] 23:07:31,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 23:07:31,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:07:31,454 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-20_23-07-31.log] [testng] 23:07:31,464 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b4e7a8c - End of configuration. [testng] [2025-03-20 23:07:41,512] [pool-1-thread-7] Initializing /data/chip_avi/Level001-ES-083.avi: [testng] [2025-03-20 23:07:42,529] [pool-1-thread-12] Initializing /data/kurt/63x_6um.avi: [testng] [2025-03-20 23:07:43,522] [pool-1-thread-3] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: [testng] [2025-03-20 23:07:44,494] [pool-1-thread-11] Initializing /data/qa-5019/nemo-2_10_20.avi: [testng] [2025-03-20 23:07:45,372] [pool-1-thread-8] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: [testng] [2025-03-20 23:07:46,331] [pool-1-thread-6] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: [testng] [2025-03-20 23:07:47,248] [pool-1-thread-2] Initializing /data/roger/spheroid1-crop.lsm movie.avi: [testng] [2025-03-20 23:07:48,153] [pool-1-thread-9] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: [testng] [2025-03-20 23:07:49,270] [pool-1-thread-10] Initializing /data/qa-7450/MVI_3610.AVI: [testng] [2025-03-20 23:07:50,219] [pool-1-thread-1] Initializing /data/kurt/40x_6um.avi: [testng] [2025-03-20 23:07:51,246] [pool-1-thread-5] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: [testng] [2025-03-20 23:07:53,316] [pool-1-thread-4] Initializing /data/ascb/TIRF.avi: [testng] [2025-03-20 23:08:02,177] [pool-1-thread-8] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: [testng] [2025-03-20 23:08:03,614] [pool-1-thread-6] Initializing /data/william/worm.avi: [testng] [2025-03-20 23:08:04,617] [pool-1-thread-9] Initializing /data/chris/APZ04_009.avi: [testng] [2025-03-20 23:08:08,535] [pool-1-thread-2] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: [testng] [2025-03-20 23:08:09,648] [pool-1-thread-3] Initializing /data/prairie/cornea dc and macs.AVI: [testng] [2025-03-20 23:08:10,850] [pool-1-thread-4] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: [testng] [2025-03-20 23:08:12,056] [pool-1-thread-11] Initializing /data/jae/20xD_5minfor14h.avi: [testng] [2025-03-20 23:08:13,220] [pool-1-thread-7] Initializing /data/roger/op9middle40x.lsm movie.avi: [testng] [2025-03-20 23:08:14,164] [pool-1-thread-10] Initializing /data/qa-11011/M-flow10001.avi: [testng] [2025-03-20 23:08:15,168] [pool-1-thread-1] Initializing /data/curtis/mri-stack-ij-old.avi: [testng] [2025-03-20 23:08:16,175] [pool-1-thread-12] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: [testng] [2025-03-20 23:08:24,331] [pool-1-thread-5] Initializing /data/curtis/mri-stack-bf.avi: [testng] [2025-03-20 23:08:25,632] [pool-1-thread-1] Initializing /data/roger/op9middle40x.lsm movie 2.avi: [testng] [2025-03-20 23:08:26,718] [pool-1-thread-4] Initializing /data/kurt/40x_6um_2.avi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 2014, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 3 minutes 4 seconds Finished: SUCCESS