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Started by upstream project "BIOFORMATS-test-repo" build number 387 originally caused by: Started by upstream project "Trigger" build number 410 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@14 [BIOFORMATS-test-folder@14] $ /bin/bash -xe /tmp/jenkins13908014154359248636.sh + '[' pict = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_61208_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 00:45:43,817 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:45:43,819 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service. [testng] 00:45:43,819 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:45:43,820 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:45:43,820 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:45:43,820 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:45:43,821 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:45:43,821 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:45:43,821 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:45:43,822 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:45:43,822 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:45:43,822 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:45:43,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:45:43,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:45:44,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:45:44,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:45:44,014 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:45:44,015 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:45:44,015 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:45:44,015 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:45:44,015 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration. [testng] 00:45:44,016 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point [testng] 00:45:44,016 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 195 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-22 00:45:44,025] [main] java.version = 11.0.16 [testng] 00:45:44,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:45:44,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:45:44,075 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-22_00-45-44.log] [testng] 00:45:44,077 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration. [testng] [2025-03-22 00:45:44,079] [main] testng.directory = /data [testng] [2025-03-22 00:45:44,079] [main] testng.configDirectory = /config [testng] [2025-03-22 00:45:44,090] [main] testng.multiplier = 1.0 [testng] [2025-03-22 00:45:44,092] [main] testng.in-memory = false [testng] [2025-03-22 00:45:44,092] [main] testng.allow-missing = false [testng] [2025-03-22 00:45:44,092] [main] user.language = en [testng] [2025-03-22 00:45:44,092] [main] user.country = ${user.country} [testng] [2025-03-22 00:45:44,092] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-22 00:45:44,721] [main] ---------------------------------------- [testng] [2025-03-22 00:45:44,721] [main] Total files: 25 [testng] [2025-03-22 00:45:44,721] [main] Scan time: 0.629 s (25 ms/file) [testng] [2025-03-22 00:45:44,721] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-22 00:46:03,875] [pool-1-thread-1] Initializing /data/misc/planet2.pict: [testng] 00:46:03,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:46:03,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:46:03,878 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-22_00-46-03.log] [testng] 00:46:03,879 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7df41d96 - End of configuration. [testng] [2025-03-22 00:46:04,594] [pool-1-thread-12] Initializing /data/brian/images/FLAG_B32.pct: [testng] 00:46:04,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:46:04,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:46:04,595 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-22_00-46-04.log] [testng] 00:46:04,596 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a89bd66 - End of configuration. [testng] [2025-03-22 00:46:05,305] [pool-1-thread-11] Initializing /data/misc/planet.pict: [testng] 00:46:05,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:46:05,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:46:05,306 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-22_00-46-05.log] [testng] 00:46:05,307 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f805497 - End of configuration. [testng] [2025-03-22 00:46:06,023] [pool-1-thread-10] Initializing /data/brian/images/WHT.PCT: [testng] 00:46:06,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:46:06,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:46:06,024 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-22_00-46-06.log] [testng] 00:46:06,024 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cc6ead1 - End of configuration. [testng] [2025-03-22 00:46:06,718] [pool-1-thread-9] Initializing /data/brian/images/GRN.PCT: [testng] 00:46:06,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:46:06,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:46:06,719 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-22_00-46-06.log] [testng] 00:46:06,720 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c5a2da2 - End of configuration. [testng] [2025-03-22 00:46:07,448] [pool-1-thread-8] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] 00:46:07,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:46:07,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:46:07,449 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-22_00-46-07.log] [testng] 00:46:07,449 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7efbf54a - End of configuration. [testng] [2025-03-22 00:46:08,255] [pool-1-thread-7] Initializing /data/brian/images/VENUS.pct: [testng] 00:46:08,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:46:08,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:46:08,256 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-22_00-46-08.log] [testng] 00:46:08,257 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10ec7b60 - End of configuration. [testng] [2025-03-22 00:46:08,907] [pool-1-thread-6] Initializing /data/brian/images/FLAG_RGB.pct: [testng] 00:46:08,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:46:08,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:46:08,908 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-22_00-46-08.log] [testng] 00:46:08,908 |-INFO in ch.qos.logback.core.sift.SiftProcessor@672a6ce3 - End of configuration. [testng] [2025-03-22 00:46:09,578] [pool-1-thread-5] Initializing /data/wayne/PotatoMeristem.pict: [testng] 00:46:09,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:46:09,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:46:09,579 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-22_00-46-09.log] [testng] 00:46:09,579 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41f8c284 - End of configuration. [testng] [2025-03-22 00:46:10,162] [pool-1-thread-4] Initializing /data/jqd/mire32.pict: [testng] 00:46:10,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:46:10,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:46:10,163 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-22_00-46-10.log] [testng] 00:46:10,163 |-INFO in ch.qos.logback.core.sift.SiftProcessor@377eca4b - End of configuration. [testng] [2025-03-22 00:46:10,823] [pool-1-thread-3] Initializing /data/brian/images/MARBLES_B32.pct: [testng] 00:46:10,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:46:10,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:46:10,824 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-22_00-46-10.log] [testng] 00:46:10,824 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75b2951 - End of configuration. [testng] [2025-03-22 00:46:11,590] [pool-1-thread-2] Initializing /data/jqd/mireSixteen.pict: [testng] 00:46:11,590 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:46:11,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:46:11,591 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-22_00-46-11.log] [testng] 00:46:11,592 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23d61918 - End of configuration. [testng] [2025-03-22 00:46:19,718] [pool-1-thread-8] Initializing /data/brian/images/RED.PCT: [testng] [2025-03-22 00:46:20,640] [pool-1-thread-5] Initializing /data/misc/planet.png: [testng] [2025-03-22 00:46:20,725] [pool-1-thread-12] Initializing /data/brian/images/TRU256.PCT: [testng] [2025-03-22 00:46:21,459] [pool-1-thread-6] Initializing /data/brian/images/BLK.PCT: [testng] [2025-03-22 00:46:22,191] [pool-1-thread-2] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2025-03-22 00:46:22,908] [pool-1-thread-4] Initializing /data/jqd/sixteenBit.pict: [testng] [2025-03-22 00:46:23,657] [pool-1-thread-10] Initializing /data/brian/images/YEL.PCT: [testng] [2025-03-22 00:46:24,497] [pool-1-thread-9] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [2025-03-22 00:46:25,310] [pool-1-thread-7] Initializing /data/jqd/32bit.pict: [testng] [2025-03-22 00:46:26,091] [pool-1-thread-11] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] [2025-03-22 00:46:26,896] [pool-1-thread-1] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] [2025-03-22 00:46:27,721] [pool-1-thread-3] Initializing /data/misc/swlogo.pict: [testng] [2025-03-22 00:46:31,018] [pool-1-thread-5] Initializing /data/brian/images/BLU.PCT: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 57 seconds Finished: SUCCESS