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Started by upstream project "BIOFORMATS-test-repo" build number 387 originally caused by: Started by upstream project "Trigger" build number 410 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins17713724702982666665.sh + '[' biorad-gel = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_61291_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 05:09:22,628 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 05:09:22,630 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service. [testng] 05:09:22,630 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:09:22,631 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:09:22,632 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 05:09:22,632 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 05:09:22,632 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 05:09:22,632 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:09:22,633 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:09:22,633 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 05:09:22,634 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 05:09:22,634 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 05:09:22,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 05:09:22,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 05:09:22,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 05:09:22,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 05:09:22,829 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 05:09:22,829 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 05:09:22,829 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 05:09:22,829 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 05:09:22,829 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration. [testng] 05:09:22,830 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point [testng] 05:09:22,830 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 197 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-22 05:09:22,839] [main] java.version = 11.0.16 [testng] 05:09:22,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:09:22,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:09:22,883 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-22_05-09-22.log] [testng] 05:09:22,885 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration. [testng] [2025-03-22 05:09:22,887] [main] testng.directory = /data [testng] [2025-03-22 05:09:22,887] [main] testng.configDirectory = /config [testng] [2025-03-22 05:09:22,897] [main] testng.multiplier = 1.0 [testng] [2025-03-22 05:09:22,898] [main] testng.in-memory = false [testng] [2025-03-22 05:09:22,898] [main] testng.allow-missing = false [testng] [2025-03-22 05:09:22,898] [main] user.language = en [testng] [2025-03-22 05:09:22,898] [main] user.country = ${user.country} [testng] [2025-03-22 05:09:22,898] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-22 05:09:31,909] [main] ---------------------------------------- [testng] [2025-03-22 05:09:31,909] [main] Total files: 32 [testng] [2025-03-22 05:09:31,909] [main] Scan time: 9.011 s (281 ms/file) [testng] [2025-03-22 05:09:31,909] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 32 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-22 05:10:55,809] [pool-1-thread-1] Initializing /data/keith/PF020328saur v3.1sc: [testng] 05:10:55,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:10:55,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:10:55,811 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-22_05-10-55.log] [testng] 05:10:55,812 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bcb6ca6 - End of configuration. [testng] [2025-03-22 05:10:57,540] [pool-1-thread-12] Initializing /data/qa-29469/bad3.1sc: [testng] 05:10:57,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:10:57,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:10:57,541 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-22_05-10-57.log] [testng] 05:10:57,541 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d913b5a - End of configuration. [testng] [2025-03-22 05:10:59,380] [pool-1-thread-11] Initializing /data/qa-29459/bad.1sc: [testng] 05:10:59,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:10:59,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:10:59,381 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-22_05-10-59.log] [testng] 05:10:59,382 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13cad196 - End of configuration. [testng] [2025-03-22 05:11:01,160] [pool-1-thread-10] Initializing /data/samples/Criterion.1sc: [testng] 05:11:01,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:11:01,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:11:01,161 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-22_05-11-01.log] [testng] 05:11:01,161 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bcddaab - End of configuration. [testng] [2025-03-22 05:11:02,849] [pool-1-thread-9] Initializing /data/sylvain/2009-10-26 14hr 59min: [testng] 05:11:02,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:11:02,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:11:02,850 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-22_05-11-02.log] [testng] 05:11:02,850 |-INFO in ch.qos.logback.core.sift.SiftProcessor@781a9b67 - End of configuration. [testng] [2025-03-22 05:11:04,811] [pool-1-thread-8] Initializing /data/sylvain/2009-10-26 14hr 57min: [testng] 05:11:04,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:11:04,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:11:04,812 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-22_05-11-04.log] [testng] 05:11:04,813 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78a34a7b - End of configuration. [testng] [2025-03-22 05:11:06,710] [pool-1-thread-7] Initializing /data/keith/pg020410saur3.1sc: [testng] 05:11:06,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:11:06,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:11:06,711 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-22_05-11-06.log] [testng] 05:11:06,711 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6270edc3 - End of configuration. [testng] [2025-03-22 05:11:08,344] [pool-1-thread-6] Initializing /data/keith/PF020426MRSA v2.1sc: [testng] 05:11:08,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:11:08,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:11:08,345 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-22_05-11-08.log] [testng] 05:11:08,345 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f402b2d - End of configuration. [testng] [2025-03-22 05:11:10,003] [pool-1-thread-5] Initializing /data/geert/good example1.1sc.jpg: [testng] 05:11:10,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:11:10,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:11:10,004 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-22_05-11-10.log] [testng] 05:11:10,004 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2837b799 - End of configuration. [testng] [2025-03-22 05:11:10,571] [pool-1-thread-4] Initializing /data/sylvain/2009-10-23 12hr 19min.tif: [testng] 05:11:10,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:11:10,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:11:10,571 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-22_05-11-10.log] [testng] 05:11:10,572 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fa2c105 - End of configuration. [testng] [2025-03-22 05:11:16,709] [pool-1-thread-3] Initializing /data/sylvain/2009-10-26 14hr 59min.tif: [testng] 05:11:16,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:11:16,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:11:16,710 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-22_05-11-16.log] [testng] 05:11:16,711 |-INFO in ch.qos.logback.core.sift.SiftProcessor@94b1a44 - End of configuration. [testng] [2025-03-22 05:11:23,290] [pool-1-thread-2] Initializing /data/sylvain/2009-10-23 12hr 18min.tif: [testng] 05:11:23,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:11:23,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:11:23,291 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-22_05-11-23.log] [testng] 05:11:23,291 |-INFO in ch.qos.logback.core.sift.SiftProcessor@121df256 - End of configuration. [testng] [2025-03-22 05:11:43,073] [pool-1-thread-7] Initializing /data/david/Converted in Quantity One (Biorad).tiff: [testng] [2025-03-22 05:11:49,443] [pool-1-thread-1] Initializing /data/sylvain/2009-10-23 12hr 19min: [testng] [2025-03-22 05:11:51,240] [pool-1-thread-6] Initializing /data/qa-29469/good.1sc: [testng] [2025-03-22 05:11:52,862] [pool-1-thread-11] Initializing /data/keith/test.1sc: [testng] [2025-03-22 05:11:54,675] [pool-1-thread-12] Initializing /data/sylvain/2009-10-23 12hr 18min: [testng] [2025-03-22 05:11:56,559] [pool-1-thread-10] Initializing /data/geert/bad example1.1sc: [testng] [2025-03-22 05:11:58,359] [pool-1-thread-9] Initializing /data/sylvain/2009-10-26 14hr 56min: [testng] [2025-03-22 05:12:00,156] [pool-1-thread-8] Initializing /data/qa-29469/bad2.1sc: [testng] [2025-03-22 05:12:01,804] [pool-1-thread-5] Initializing /data/david/Original Biorad Gel format file.1sc: [testng] [2025-03-22 05:12:15,553] [pool-1-thread-11] Initializing /data/geert/good example1.1sc: [testng] [2025-03-22 05:12:17,619] [pool-1-thread-5] Initializing /data/samples/imagesEight.1sc: [testng] [2025-03-22 05:12:19,389] [pool-1-thread-8] Initializing /data/qa-16880/c-src v7.1sc: [testng] [2025-03-22 05:12:21,210] [pool-1-thread-9] Initializing /data/adrian/test_img.1sc: [testng] [2025-03-22 05:12:23,076] [pool-1-thread-1] Initializing /data/keith/test2.1sc: [testng] [2025-03-22 05:12:24,858] [pool-1-thread-10] Initializing /data/sylvain/2009-10-26 14hr 57min.tif: [testng] [2025-03-22 05:12:30,943] [pool-1-thread-12] Initializing /data/qa-29459/bad.jpg: [testng] [2025-03-22 05:12:31,503] [pool-1-thread-6] Initializing /data/david/Opened in imageJ.tiff: [testng] [2025-03-22 05:12:37,759] [pool-1-thread-4] Initializing /data/sylvain/2009-10-26 14hr 56min.tif: [testng] [2025-03-22 05:12:44,621] [pool-1-thread-2] Initializing /data/geert/bad example1.1sc.jpg: [testng] [2025-03-22 05:12:45,315] [pool-1-thread-3] Initializing /data/geert/bad example1.jpg: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1696, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 3 minutes 57 seconds Finished: SUCCESS