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Started by upstream project "BIOFORMATS-test-repo" build number 387 originally caused by: Started by upstream project "Trigger" build number 410 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@12 [BIOFORMATS-test-folder@12] $ /bin/bash -xe /tmp/jenkins16415964563804657946.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_61313_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 07:50:52,694 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 07:50:52,695 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service. [testng] 07:50:52,695 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:50:52,696 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:50:52,697 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 07:50:52,697 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 07:50:52,698 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 07:50:52,698 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:50:52,698 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:50:52,699 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 07:50:52,699 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 07:50:52,699 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 07:50:52,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 07:50:52,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 07:50:52,886 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 07:50:52,886 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 07:50:52,891 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 07:50:52,891 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 07:50:52,891 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 07:50:52,891 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 07:50:52,891 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration. [testng] 07:50:52,892 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point [testng] 07:50:52,893 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 195 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-22 07:50:52,901] [main] java.version = 11.0.16 [testng] 07:50:52,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:50:52,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:50:52,946 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-22_07-50-52.log] [testng] 07:50:52,947 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration. [testng] [2025-03-22 07:50:52,950] [main] testng.directory = /data [testng] [2025-03-22 07:50:52,950] [main] testng.configDirectory = /config [testng] [2025-03-22 07:50:52,960] [main] testng.multiplier = 1.0 [testng] [2025-03-22 07:50:52,961] [main] testng.in-memory = false [testng] [2025-03-22 07:50:52,961] [main] testng.allow-missing = false [testng] [2025-03-22 07:50:52,961] [main] user.language = en [testng] [2025-03-22 07:50:52,961] [main] user.country = ${user.country} [testng] [2025-03-22 07:50:52,961] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-22 07:52:21,003] [main] ---------------------------------------- [testng] [2025-03-22 07:52:21,004] [main] Total files: 31 [testng] [2025-03-22 07:52:21,004] [main] Scan time: 88.042 s (2840 ms/file) [testng] [2025-03-22 07:52:21,004] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-22 07:54:20,803] [pool-1-thread-1] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] 07:54:20,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 07:54:20,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:54:20,806 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-22_07-54-20.log] [testng] 07:54:20,806 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35f7ccd8 - End of configuration. [testng] [2025-03-22 07:54:23,940] [pool-1-thread-12] Initializing /data/vikram/Captured 3.jp2: [testng] 07:54:23,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 07:54:23,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:54:23,948 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-22_07-54-23.log] [testng] 07:54:23,949 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b63df94 - End of configuration. [testng] [2025-03-22 07:54:26,917] [pool-1-thread-11] Initializing /data/vikram/Captured 1.jp2: [testng] 07:54:26,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 07:54:26,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:54:26,918 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-22_07-54-26.log] [testng] 07:54:26,919 |-INFO in ch.qos.logback.core.sift.SiftProcessor@104e2e3a - End of configuration. [testng] [2025-03-22 07:54:29,974] [pool-1-thread-10] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] 07:54:29,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 07:54:29,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:54:29,975 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-22_07-54-29.log] [testng] 07:54:29,975 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c692b2f - End of configuration. [testng] [2025-03-22 07:54:32,950] [pool-1-thread-9] Initializing /data/david/cy5-tph.jp2: [testng] 07:54:32,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 07:54:32,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:54:32,951 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-22_07-54-32.log] [testng] 07:54:32,952 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f34b680 - End of configuration. [testng] [2025-03-22 07:54:35,908] [pool-1-thread-8] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] 07:54:35,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 07:54:35,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:54:35,909 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-22_07-54-35.log] [testng] 07:54:35,909 |-INFO in ch.qos.logback.core.sift.SiftProcessor@470dfb1b - End of configuration. [testng] [2025-03-22 07:54:38,744] [pool-1-thread-7] Initializing /data/big-images/8kx8k.jpf: [testng] 07:54:38,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 07:54:38,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:54:38,745 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-22_07-54-38.log] [testng] 07:54:38,745 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d2b4932 - End of configuration. [testng] [2025-03-22 07:54:41,701] [pool-1-thread-6] Initializing /data/big-images/2kx2k.jpf: [testng] 07:54:41,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 07:54:41,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:54:41,702 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-22_07-54-41.log] [testng] 07:54:41,703 |-INFO in ch.qos.logback.core.sift.SiftProcessor@359fddf3 - End of configuration. [testng] [2025-03-22 07:54:44,641] [pool-1-thread-5] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] 07:54:44,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 07:54:44,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:54:44,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-22_07-54-44.log] [testng] 07:54:44,643 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c4b630e - End of configuration. [testng] [2025-03-22 07:54:48,194] [pool-1-thread-4] Initializing /data/misc/clown-rgb.jp2: [testng] 07:54:48,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 07:54:48,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:54:48,194 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-22_07-54-48.log] [testng] 07:54:48,195 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60456099 - End of configuration. [testng] [2025-03-22 07:54:51,568] [pool-1-thread-3] Initializing /data/kraig/head.jp2: [testng] 07:54:51,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 07:54:51,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:54:51,569 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-22_07-54-51.log] [testng] 07:54:51,569 |-INFO in ch.qos.logback.core.sift.SiftProcessor@250a4279 - End of configuration. [testng] [2025-03-22 07:54:55,384] [pool-1-thread-2] Initializing /data/aryeh/flour 12.jp2: [testng] 07:54:55,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 07:54:55,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:54:55,385 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-22_07-54-55.log] [testng] 07:54:55,385 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3971624 - End of configuration. [testng] [2025-03-22 07:55:34,970] [pool-1-thread-4] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] [2025-03-22 07:55:50,114] [pool-1-thread-8] Initializing /data/misc/clown-rgb.jbig: [testng] [2025-03-22 07:56:01,532] [pool-1-thread-12] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] [2025-03-22 07:56:11,552] [pool-1-thread-11] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] [2025-03-22 07:56:14,610] [pool-1-thread-2] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] [2025-03-22 07:56:17,807] [pool-1-thread-3] Initializing /data/vikram/Captured 5.jp2: [testng] [2025-03-22 07:56:21,401] [pool-1-thread-6] Initializing /data/vikram/Captured 2.jp2: [testng] [2025-03-22 07:56:25,116] [pool-1-thread-10] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] [2025-03-22 07:56:28,418] [pool-1-thread-1] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] [2025-03-22 07:56:52,212] [pool-1-thread-6] Initializing /data/david/000000_000001.jpx: [testng] [2025-03-22 07:56:55,657] [pool-1-thread-3] Initializing /data/david/C1R1_FOS.jp2: [testng] [2025-03-22 07:57:01,174] [pool-1-thread-1] Initializing /data/venu/Multichannel 3a.jpg: [testng] [2025-03-22 07:57:07,144] [pool-1-thread-10] Initializing /data/misc/clown-rgb.jpc: [testng] [2025-03-22 07:57:13,043] [pool-1-thread-8] Initializing /data/david/multichannel-2d test.jp2: [testng] [2025-03-22 07:57:15,491] [pool-1-thread-12] Initializing /data/big-images/4kx4k.jpf: [testng] [2025-03-22 07:57:18,608] [pool-1-thread-4] Initializing /data/frans/flower.jp2: [testng] [2025-03-22 07:57:22,988] [pool-1-thread-1] Initializing /data/vikram/Captured 4.jp2: [testng] [2025-03-22 07:57:28,780] [pool-1-thread-6] Initializing /data/venu/Multichannel 3.jp2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 11 minutes 13 seconds Finished: SUCCESS