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Started by upstream project "BIOFORMATS-test-repo" build number 388 originally caused by: Started by upstream project "Trigger" build number 411 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins12760042727920491307.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_61322_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:22:47,361 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:22:47,362 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 00:22:47,362 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:22:47,363 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:22:47,363 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:22:47,364 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:22:47,364 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:22:47,364 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:22:47,364 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:22:47,365 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:22:47,365 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:22:47,365 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:22:47,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:22:47,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:22:47,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:22:47,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:22:47,560 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:22:47,560 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:22:47,560 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:22:47,560 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:22:47,560 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 00:22:47,561 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 00:22:47,561 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 197 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-23 00:22:47,570] [main] java.version = 17.0.2 [testng] 00:22:47,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:22:47,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:47,612 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-23_00-22-47.log] [testng] 00:22:47,614 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-03-23 00:22:47,616] [main] testng.directory = /data [testng] [2025-03-23 00:22:47,616] [main] testng.configDirectory = /config [testng] [2025-03-23 00:22:47,624] [main] testng.multiplier = 1.0 [testng] [2025-03-23 00:22:47,625] [main] testng.in-memory = false [testng] [2025-03-23 00:22:47,625] [main] testng.allow-missing = false [testng] [2025-03-23 00:22:47,625] [main] user.language = en [testng] [2025-03-23 00:22:47,626] [main] user.country = ${user.country} [testng] [2025-03-23 00:22:47,626] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-23 00:22:48,396] [main] ---------------------------------------- [testng] [2025-03-23 00:22:48,396] [main] Total files: 36 [testng] [2025-03-23 00:22:48,396] [main] Scan time: 0.77 s (21 ms/file) [testng] [2025-03-23 00:22:48,396] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-23 00:22:49,933] [pool-1-thread-1] Initializing /data/generated/mri-stack24.pcx: [testng] 00:22:49,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:22:49,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:49,935 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-23_00-22-49.log] [testng] 00:22:49,935 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40a26be9 - End of configuration. [testng] [2025-03-23 00:22:49,995] [pool-1-thread-12] Initializing /data/generated/mri-stack23.pcx: [testng] 00:22:49,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:22:49,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:49,996 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-23_00-22-49.log] [testng] 00:22:49,996 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a7ebb86 - End of configuration. [testng] [2025-03-23 00:22:50,010] [pool-1-thread-11] Initializing /data/generated/mri-stack16.pcx: [testng] 00:22:50,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:22:50,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:50,011 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-23_00-22-50.log] [testng] 00:22:50,011 |-INFO in ch.qos.logback.core.sift.SiftProcessor@790a6afa - End of configuration. [testng] [2025-03-23 00:22:50,022] [pool-1-thread-10] Initializing /data/generated/mri-stack15.pcx: [testng] 00:22:50,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:22:50,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:50,023 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-23_00-22-50.log] [testng] 00:22:50,024 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5389b543 - End of configuration. [testng] [2025-03-23 00:22:50,035] [pool-1-thread-9] Initializing /data/generated/mri-stack2.pcx: [testng] 00:22:50,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:22:50,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:50,036 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-23_00-22-50.log] [testng] 00:22:50,036 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fedd022 - End of configuration. [testng] [2025-03-23 00:22:50,046] [pool-1-thread-8] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] 00:22:50,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:22:50,047 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:50,047 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-23_00-22-50.log] [testng] 00:22:50,047 |-INFO in ch.qos.logback.core.sift.SiftProcessor@380d6831 - End of configuration. [testng] [2025-03-23 00:22:50,062] [pool-1-thread-7] Initializing /data/generated/mri-stack5.pcx: [testng] 00:22:50,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:22:50,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:50,063 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-23_00-22-50.log] [testng] 00:22:50,063 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ed65e2 - End of configuration. [testng] [2025-03-23 00:22:50,073] [pool-1-thread-6] Initializing /data/generated/mri-stack9.pcx: [testng] 00:22:50,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:22:50,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:50,074 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-23_00-22-50.log] [testng] 00:22:50,075 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6323a76a - End of configuration. [testng] [2025-03-23 00:22:50,089] [pool-1-thread-5] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] 00:22:50,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:22:50,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:50,090 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-23_00-22-50.log] [testng] 00:22:50,091 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7938f0d2 - End of configuration. [testng] [2025-03-23 00:22:50,108] [pool-1-thread-4] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] 00:22:50,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:22:50,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:50,109 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-23_00-22-50.log] [testng] 00:22:50,110 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cd238e3 - End of configuration. [testng] [2025-03-23 00:22:50,128] [pool-1-thread-3] Initializing /data/generated/mri-stack11.pcx: [testng] 00:22:50,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:22:50,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:50,129 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-23_00-22-50.log] [testng] 00:22:50,129 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a3b5a4b - End of configuration. [testng] [2025-03-23 00:22:50,145] [pool-1-thread-2] Initializing /data/generated/mri-stack22.pcx: [testng] 00:22:50,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:22:50,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:50,146 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-23_00-22-50.log] [testng] 00:22:50,147 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b85bc85 - End of configuration. [testng] [2025-03-23 00:22:52,476] [pool-1-thread-11] Initializing /data/generated/mri-stack10.pcx: [testng] [2025-03-23 00:22:52,486] [pool-1-thread-12] Initializing /data/generated/mri-stack3.pcx: [testng] [2025-03-23 00:22:52,494] [pool-1-thread-9] Initializing /data/generated/mri-stack26.pcx: [testng] [2025-03-23 00:22:52,502] [pool-1-thread-1] Initializing /data/generated/mri-stack18.pcx: [testng] [2025-03-23 00:22:52,513] [pool-1-thread-7] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] [2025-03-23 00:22:52,524] [pool-1-thread-3] Initializing /data/generated/mri-stack19.pcx: [testng] [2025-03-23 00:22:52,539] [pool-1-thread-10] Initializing /data/generated/mri-stack0.pcx: [testng] [2025-03-23 00:22:52,555] [pool-1-thread-2] Initializing /data/generated/mri-stack14.pcx: [testng] [2025-03-23 00:22:52,569] [pool-1-thread-6] Initializing /data/generated/mri-stack13.pcx: [testng] [2025-03-23 00:22:52,582] [pool-1-thread-4] Initializing /data/generated/mri-stack25.pcx: [testng] [2025-03-23 00:22:52,599] [pool-1-thread-5] Initializing /data/generated/mri-stack1.pcx: [testng] [2025-03-23 00:22:52,612] [pool-1-thread-8] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] [2025-03-23 00:22:53,289] [pool-1-thread-4] Initializing /data/generated/mri-stack6.pcx: [testng] [2025-03-23 00:22:53,353] [pool-1-thread-5] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] [2025-03-23 00:22:53,369] [pool-1-thread-9] Initializing /data/generated/mri-stack17.pcx: [testng] [2025-03-23 00:22:53,410] [pool-1-thread-2] Initializing /data/generated/mri-stack7.pcx: [testng] [2025-03-23 00:22:53,436] [pool-1-thread-10] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] [2025-03-23 00:22:53,491] [pool-1-thread-1] Initializing /data/generated/mri-stack8.pcx: [testng] [2025-03-23 00:22:53,517] [pool-1-thread-3] Initializing /data/generated/mri-stack12.pcx: [testng] [2025-03-23 00:22:53,534] [pool-1-thread-11] Initializing /data/generated/mri-stack21.pcx: [testng] [2025-03-23 00:22:53,545] [pool-1-thread-6] Initializing /data/generated/mri-stack20.pcx: [testng] [2025-03-23 00:22:53,555] [pool-1-thread-12] Initializing /data/generated/mri-stack4.pcx: [testng] [2025-03-23 00:22:53,869] [pool-1-thread-4] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 11 seconds Finished: SUCCESS