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Started by upstream project "BIOFORMATS-test-repo" build number 388 originally caused by: Started by upstream project "Trigger" build number 411 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@12 [BIOFORMATS-test-folder@12] $ /bin/bash -xe /tmp/jenkins6080477232078037749.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_61364_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:31:03,912 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:31:03,913 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 00:31:03,913 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:31:03,914 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:31:03,915 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:31:03,915 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:31:03,915 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:31:03,915 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:31:03,916 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:31:03,916 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:31:03,916 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:31:03,917 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:31:04,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:31:04,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:31:04,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:31:04,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:31:04,102 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:31:04,102 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:31:04,102 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:31:04,103 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:31:04,103 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 00:31:04,104 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 00:31:04,104 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 188 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-23 00:31:04,112] [main] java.version = 17.0.2 [testng] 00:31:04,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:31:04,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:04,154 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-23_00-31-04.log] [testng] 00:31:04,156 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-03-23 00:31:04,158] [main] testng.directory = /data [testng] [2025-03-23 00:31:04,158] [main] testng.configDirectory = /config [testng] [2025-03-23 00:31:04,181] [main] testng.multiplier = 1.0 [testng] [2025-03-23 00:31:04,182] [main] testng.in-memory = false [testng] [2025-03-23 00:31:04,182] [main] testng.allow-missing = false [testng] [2025-03-23 00:31:04,182] [main] user.language = en [testng] [2025-03-23 00:31:04,182] [main] user.country = ${user.country} [testng] [2025-03-23 00:31:04,183] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-23 00:32:41,400] [main] ---------------------------------------- [testng] [2025-03-23 00:32:41,400] [main] Total files: 259 [testng] [2025-03-23 00:32:41,400] [main] Scan time: 97.216 s (375 ms/file) [testng] [2025-03-23 00:32:41,400] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-23 00:58:48,917] [pool-1-thread-1] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] 00:58:48,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:58:48,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:48,919 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-23_00-58-48.log] [testng] 00:58:48,919 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d34a2ef - End of configuration. [testng] [2025-03-23 00:58:50,904] [pool-1-thread-12] Initializing /data/stefan/yc2_live-03.oib: [testng] 00:58:50,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:58:50,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:50,905 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-23_00-58-50.log] [testng] 00:58:50,906 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8863891 - End of configuration. [testng] [2025-03-23 00:58:53,158] [pool-1-thread-11] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] 00:58:53,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:58:53,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:53,159 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-23_00-58-53.log] [testng] 00:58:53,159 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68b54c21 - End of configuration. [testng] [2025-03-23 00:58:55,837] [pool-1-thread-10] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] 00:58:55,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:58:55,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:55,838 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-23_00-58-55.log] [testng] 00:58:55,839 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f886058 - End of configuration. [testng] [2025-03-23 00:58:57,582] [pool-1-thread-9] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] 00:58:57,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:58:57,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:57,583 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-23_00-58-57.log] [testng] 00:58:57,584 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c6e3370 - End of configuration. [testng] [2025-03-23 00:59:00,436] [pool-1-thread-8] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] 00:59:00,436 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:59:00,436 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:00,437 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-23_00-59-00.log] [testng] 00:59:00,437 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21d08a21 - End of configuration. [testng] [2025-03-23 00:59:05,961] [pool-1-thread-7] Initializing /data/yasunori/series_1.oib: [testng] 00:59:05,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:59:05,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:05,962 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-23_00-59-05.log] [testng] 00:59:05,963 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32645d12 - End of configuration. [testng] [2025-03-23 00:59:08,349] [pool-1-thread-6] Initializing /data/johannes/step5b.bmp: [testng] 00:59:08,349 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:59:08,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:08,350 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-23_00-59-08.log] [testng] 00:59:08,351 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4409ab1d - End of configuration. [testng] [2025-03-23 00:59:08,734] [pool-1-thread-5] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] 00:59:08,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:59:08,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:08,736 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-23_00-59-08.log] [testng] 00:59:08,736 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37ba8f6a - End of configuration. [testng] [2025-03-23 00:59:10,589] [pool-1-thread-4] Initializing /data/aryeh/030408 2 1.oib: [testng] 00:59:10,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:59:10,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:10,590 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-23_00-59-10.log] [testng] 00:59:10,590 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47e3378c - End of configuration. [testng] [2025-03-23 00:59:12,796] [pool-1-thread-3] Initializing /data/glen/singlesimul.oif: [testng] 00:59:12,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:59:12,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:12,797 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-23_00-59-12.log] [testng] 00:59:12,798 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e1162c0 - End of configuration. [testng] [2025-03-23 00:59:16,468] [pool-1-thread-2] Initializing /data/glen/simulstack.oib: [testng] 00:59:16,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:59:16,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:16,469 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-23_00-59-16.log] [testng] 00:59:16,469 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a0540c2 - End of configuration. [testng] [2025-03-23 00:59:27,902] [pool-1-thread-6] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] [2025-03-23 00:59:39,606] [pool-1-thread-5] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2025-03-23 00:59:42,115] [pool-1-thread-4] Initializing /data/yoshihito/XY.oif: [testng] [2025-03-23 00:59:45,431] [pool-1-thread-7] Initializing /data/molly/11OCT6.OIF: [testng] [2025-03-23 01:00:34,348] [pool-1-thread-1] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2025-03-23 01:00:44,765] [pool-1-thread-10] Initializing /data/qa-17748/Image0079.oib: [testng] [2025-03-23 01:00:46,682] [pool-1-thread-2] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2025-03-23 01:00:49,516] [pool-1-thread-12] Initializing /data/brian/FLIP.oib: [testng] [2025-03-23 01:00:57,746] [pool-1-thread-6] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2025-03-23 01:01:20,410] [pool-1-thread-10] Initializing /data/molly/11OCT11.OIF: [testng] [2025-03-23 01:02:28,645] [pool-1-thread-5] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2025-03-23 01:02:31,900] [pool-1-thread-8] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2025-03-23 01:02:35,737] [pool-1-thread-12] Initializing /data/molly/11OCT5.OIF: [testng] [2025-03-23 01:03:42,160] [pool-1-thread-2] Initializing /data/jae/Image0001.oib: [testng] [2025-03-23 01:03:58,564] [pool-1-thread-5] Initializing /data/glen/notsaturated.oif: [testng] [2025-03-23 01:04:09,276] [pool-1-thread-11] Initializing /data/johannes/step3.bmp: [testng] [2025-03-23 01:04:09,851] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2025-03-23 01:04:13,757] [pool-1-thread-3] Initializing /data/glen/LUT issue/60x11.oif: [testng] [2025-03-23 01:04:27,118] [pool-1-thread-2] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] [2025-03-23 01:06:27,105] [pool-1-thread-11] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2025-03-23 01:06:30,401] [pool-1-thread-4] Initializing /data/glen/singlesimul.oib: [testng] [2025-03-23 01:06:34,808] [pool-1-thread-11] Initializing /data/simon/used_to_work.oib: [testng] [2025-03-23 01:06:39,147] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2025-03-23 01:06:42,325] [pool-1-thread-9] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2025-03-23 01:06:50,263] [pool-1-thread-4] Initializing /data/tom/RGB-1.avi: [testng] [2025-03-23 01:06:55,414] [pool-1-thread-11] Initializing /data/satoshi/60x_5x_1.oif: [testng] [2025-03-23 01:07:02,632] [pool-1-thread-9] Initializing /data/yoshihito/XY.oib: [testng] [2025-03-23 01:07:06,485] [pool-1-thread-8] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2025-03-23 01:07:10,313] [pool-1-thread-4] Initializing /data/glen/Image0002.oif: [testng] [2025-03-23 01:07:32,432] [pool-1-thread-9] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2025-03-23 01:07:37,617] [pool-1-thread-8] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2025-03-23 01:07:51,270] [pool-1-thread-9] Initializing /data/glen/4205basal106072.oif: [testng] [2025-03-23 01:08:11,629] [pool-1-thread-8] Initializing /data/molly/11OCT8.OIF: [testng] [2025-03-23 01:17:29,332] [pool-1-thread-11] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2025-03-23 01:17:45,678] [pool-1-thread-11] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2025-03-23 01:18:03,387] [pool-1-thread-11] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2025-03-23 01:18:17,942] [pool-1-thread-11] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2025-03-23 01:18:33,211] [pool-1-thread-11] Initializing /data/qa-17748/Image0098.oib: [testng] [2025-03-23 01:18:48,134] [pool-1-thread-11] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2025-03-23 01:19:08,635] [pool-1-thread-11] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] [2025-03-23 01:22:26,430] [pool-1-thread-11] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2025-03-23 01:30:38,376] [pool-1-thread-5] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2025-03-23 01:30:56,182] [pool-1-thread-5] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2025-03-23 01:31:14,785] [pool-1-thread-5] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2025-03-23 01:31:31,031] [pool-1-thread-5] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2025-03-23 01:32:52,007] [pool-1-thread-11] Initializing /data/glen/simulstack.oif: [testng] [2025-03-23 01:47:29,880] [pool-1-thread-5] Initializing /data/stefan/cytosol_08b.oif: [testng] [2025-03-23 01:55:27,238] [pool-1-thread-1] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2025-03-23 01:55:50,451] [pool-1-thread-1] Initializing /data/johannes/step4b.bmp: [testng] [2025-03-23 01:56:00,060] [pool-1-thread-1] Initializing /data/glen/singleseqframe.oib: [testng] [2025-03-23 01:56:23,453] [pool-1-thread-1] Initializing /data/marc/V0606L.oib: [testng] [2025-03-23 01:57:01,058] [pool-1-thread-1] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2025-03-23 01:58:59,224] [pool-1-thread-3] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2025-03-23 01:59:22,943] [pool-1-thread-3] Initializing /data/christian/20min.oif: [testng] [2025-03-23 02:01:02,497] [pool-1-thread-3] Initializing /data/brian/CFP-GFP2.oib: [testng] [2025-03-23 02:01:26,985] [pool-1-thread-3] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2025-03-23 02:01:45,924] [pool-1-thread-3] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2025-03-23 02:02:06,640] [pool-1-thread-3] Initializing /data/brian/CagedATP CaG7.oib: [testng] [2025-03-23 02:02:25,637] [pool-1-thread-3] Initializing /data/monica/Image0056.oif: [testng] 02:04:30,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:04:30,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:30,205 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-23_02-04-30.log] [testng] 02:04:30,205 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2472813b - End of configuration. [testng] [2025-03-23 02:05:55,699] [pool-1-thread-3] Initializing /data/johannes/step1.bmp: [testng] [2025-03-23 02:06:04,690] [pool-1-thread-3] Initializing /data/johannes/Image0010/Image0010.oif: [testng] [2025-03-23 02:08:11,844] [pool-1-thread-1] Initializing /data/sten/01.oib: [testng] [2025-03-23 02:08:31,459] [pool-1-thread-1] Initializing /data/stefan/cytosol_01a.oif: [testng] [2025-03-23 02:14:50,201] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2025-03-23 02:15:09,076] [pool-1-thread-4] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2025-03-23 02:15:22,938] [pool-1-thread-4] Initializing /data/simon/never_worked.oib: [testng] [2025-03-23 02:15:39,774] [pool-1-thread-4] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2025-03-23 02:15:54,538] [pool-1-thread-4] Initializing /data/glen/Null file/test no change.oif: [testng] 02:16:02,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:16:02,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:02,076 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-23_02-16-02.log] [testng] 02:16:02,076 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4663c2c8 - End of configuration. [testng] [2025-03-23 02:17:21,460] [pool-1-thread-12] Initializing /data/glen/111407.oif: [testng] [2025-03-23 02:17:34,499] [pool-1-thread-6] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2025-03-23 02:17:48,684] [pool-1-thread-6] Initializing /data/molly/11OCT10.OIF: [testng] [2025-03-23 02:18:54,447] [pool-1-thread-4] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2025-03-23 02:19:08,090] [pool-1-thread-4] Initializing /data/brian/LILY POLLEN.oib: [testng] [2025-03-23 02:19:19,558] [pool-1-thread-3] Initializing /data/johannes/step2.bmp: [testng] [2025-03-23 02:19:25,505] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2025-03-23 02:19:28,125] [pool-1-thread-4] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] 02:19:41,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:19:41,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:41,064 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-23_02-19-41.log] [testng] 02:19:41,064 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d665800 - End of configuration. [testng] [2025-03-23 02:19:47,370] [pool-1-thread-3] Initializing /data/glen/singleseqframe.oif: [testng] [2025-03-23 02:22:53,992] [pool-1-thread-3] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2025-03-23 02:23:11,711] [pool-1-thread-3] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2025-03-23 02:23:30,117] [pool-1-thread-3] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] [2025-03-23 02:23:48,787] [pool-1-thread-3] Initializing /data/glen/seqlinestack.oif: [testng] [2025-03-23 02:25:45,953] [pool-1-thread-7] Initializing /data/david/Image0016.oif: [testng] [2025-03-23 02:29:56,644] [pool-1-thread-10] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] [2025-03-23 02:30:47,973] [pool-1-thread-7] Initializing /data/glen/singleseqline.oib: [testng] [2025-03-23 02:31:06,145] [pool-1-thread-7] Initializing /data/stefan/cytosol_03e.oib: [testng] [2025-03-23 02:31:13,181] [pool-1-thread-11] Initializing /data/brian/lambda02nm.oib: [testng] [2025-03-23 02:31:32,161] [pool-1-thread-7] Initializing /data/johannes/step4.bmp: [testng] [2025-03-23 02:31:33,500] [pool-1-thread-11] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2025-03-23 02:31:46,697] [pool-1-thread-7] Initializing /data/karl/Image0009.oib: [testng] [2025-03-23 02:32:04,080] [pool-1-thread-7] Initializing /data/allan/62909#1.oib: [testng] [2025-03-23 02:32:11,252] [pool-1-thread-10] Initializing /data/glen/Null file/test change.oif: [testng] [2025-03-23 02:32:24,208] [pool-1-thread-7] Initializing /data/aryeh/1h_after_pdt.oib: [testng] [2025-03-23 02:33:02,883] [pool-1-thread-8] Initializing /data/francesco/fGfp.c15.oib: [testng] [2025-03-23 02:33:06,170] [pool-1-thread-7] Initializing /data/molly/11OCT4.OIF: [testng] [2025-03-23 02:34:15,688] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] [2025-03-23 02:34:36,750] [pool-1-thread-8] Initializing /data/molly/11OCT7.OIF: [testng] [2025-03-23 02:35:35,474] [pool-1-thread-10] Initializing /data/brian/PA-GFP-3.oib: [testng] [2025-03-23 02:35:53,523] [pool-1-thread-10] Initializing /data/brian/Kaede15.oib: [testng] [2025-03-23 02:36:10,813] [pool-1-thread-10] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2025-03-23 02:39:57,051] [pool-1-thread-9] Initializing /data/pedro/plv-test.oib: [testng] [2025-03-23 02:40:13,460] [pool-1-thread-9] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2025-03-23 02:40:29,390] [pool-1-thread-9] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2025-03-23 02:40:34,567] [pool-1-thread-9] Initializing /data/molly/11OCT3.OIF: [testng] [2025-03-23 02:57:10,817] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2025-03-23 02:57:30,558] [pool-1-thread-4] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2025-03-23 03:00:17,465] [pool-1-thread-4] Initializing /data/chris/missegragation-15.oib: [testng] [2025-03-23 03:00:46,476] [pool-1-thread-4] Initializing /data/glen/notsaturated.oib: [testng] [2025-03-23 03:01:13,952] [pool-1-thread-4] Initializing /data/marc/V0606J.oib: [testng] [2025-03-23 03:01:49,450] [pool-1-thread-4] Initializing /data/glen/seqlinestack.oib: [testng] [2025-03-23 03:02:13,709] [pool-1-thread-4] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2025-03-23 03:02:37,007] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2025-03-23 03:03:00,080] [pool-1-thread-4] Initializing /data/molly/11OCT9.OIF: [testng] [2025-03-23 03:11:17,142] [pool-1-thread-10] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2025-03-23 03:14:33,683] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2025-03-23 03:15:04,029] [pool-1-thread-12] Initializing /data/michael/CELL3.oib: [testng] [2025-03-23 03:15:32,491] [pool-1-thread-12] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] [2025-03-23 03:16:02,141] [pool-1-thread-12] Initializing /data/brian/Lambda10nm.oib: [testng] [2025-03-23 03:16:28,475] [pool-1-thread-12] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2025-03-23 03:16:50,781] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2025-03-23 03:17:18,034] [pool-1-thread-12] Initializing /data/aryeh/1h.oib: [testng] [2025-03-23 03:17:51,916] [pool-1-thread-12] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2025-03-23 03:18:20,268] [pool-1-thread-12] Initializing /data/tom/zseries-test.oib: [testng] [2025-03-23 03:18:47,430] [pool-1-thread-12] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2025-03-23 03:19:17,114] [pool-1-thread-12] Initializing /data/glen/singleseqline.oif: [testng] [2025-03-23 03:19:55,764] [pool-1-thread-11] Initializing /data/molly/11OCT2.OIF: [testng] [2025-03-23 03:24:58,147] [pool-1-thread-12] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2025-03-23 03:25:27,986] [pool-1-thread-12] Initializing /data/aryeh/control_test.oib: [testng] [2025-03-23 03:26:11,941] [pool-1-thread-12] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2025-03-23 03:26:32,831] [pool-1-thread-12] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] [2025-03-23 03:26:54,435] [pool-1-thread-12] Initializing /data/david/Image0016.oib: [testng] [2025-03-23 03:27:15,262] [pool-1-thread-12] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2025-03-23 03:27:44,309] [pool-1-thread-12] Initializing /data/kay/IM2pg.oib: [testng] 03:47:55,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:47:55,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:47:55,221 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-23_03-47-55.log] [testng] 03:47:55,221 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e871abf - End of configuration. [testng] 03:48:17,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:48:17,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:48:17,610 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-23_03-48-17.log] [testng] 03:48:17,611 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7431738b - End of configuration. [testng] 04:08:13,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:08:13,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:08:13,015 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-23_04-08-13.log] [testng] 04:08:13,015 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a88a2b7 - End of configuration. [testng] 05:34:52,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:34:52,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:34:52,414 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-23_05-34-52.log] [testng] 05:34:52,414 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a1812b6 - End of configuration. [testng] 05:38:25,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:38:25,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:38:25,280 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-23_05-38-25.log] [testng] 05:38:25,280 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79cdc373 - End of configuration. [testng] 05:48:46,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:48:46,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:48:46,123 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-23_05-48-46.log] [testng] 05:48:46,123 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70145da5 - End of configuration. [testng] 07:55:40,362 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 07:55:40,362 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:55:40,363 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-23_07-55-40.log] [testng] 07:55:40,363 |-INFO in ch.qos.logback.core.sift.SiftProcessor@715b709c - End of configuration. [testng] 08:16:59,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:16:59,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:16:59,112 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-23_08-16-59.log] [testng] 08:16:59,113 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ec693e1 - End of configuration. [testng] 08:44:10,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:44:10,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:44:10,923 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-23_08-44-10.log] [testng] 08:44:10,923 |-INFO in ch.qos.logback.core.sift.SiftProcessor@428fef32 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 493 minutes 12 seconds Finished: SUCCESS