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Started by upstream project "BIOFORMATS-test-repo" build number 388 originally caused by: Started by upstream project "Trigger" build number 411 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@18 [BIOFORMATS-test-folder@18] $ /bin/bash -xe /tmp/jenkins16500051995906854603.sh + '[' zeiss-tiff = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_61451_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:59:13,905 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 02:59:13,907 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 02:59:13,907 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:59:13,908 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:59:13,908 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:59:13,909 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:59:13,909 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:59:13,909 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:59:13,909 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:59:13,910 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:59:13,910 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:59:13,910 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:59:14,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:59:14,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:59:14,093 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:59:14,093 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:59:14,099 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:59:14,099 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:59:14,099 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:59:14,100 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:59:14,100 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 02:59:14,101 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 02:59:14,101 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 192 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-23 02:59:14,109] [main] java.version = 17.0.2 [testng] 02:59:14,113 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:59:14,113 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:59:14,152 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-23_02-59-14.log] [testng] 02:59:14,154 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-03-23 02:59:14,156] [main] testng.directory = /data [testng] [2025-03-23 02:59:14,156] [main] testng.configDirectory = /config [testng] [2025-03-23 02:59:14,165] [main] testng.multiplier = 1.0 [testng] [2025-03-23 02:59:14,166] [main] testng.in-memory = false [testng] [2025-03-23 02:59:14,166] [main] testng.allow-missing = false [testng] [2025-03-23 02:59:14,166] [main] user.language = en [testng] [2025-03-23 02:59:14,166] [main] user.country = ${user.country} [testng] [2025-03-23 02:59:14,166] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-23 03:12:43,981] [main] ---------------------------------------- [testng] [2025-03-23 03:12:43,982] [main] Total files: 15735 [testng] [2025-03-23 03:12:43,982] [main] Scan time: 809.815 s (51 ms/file) [testng] [2025-03-23 03:12:43,982] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 125 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-23 03:31:20,065] [pool-1-thread-1] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif: [testng] 03:31:20,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:31:20,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:31:20,067 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-23_03-31-20.log] [testng] 03:31:20,067 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d07d99 - End of configuration. [testng] [2025-03-23 03:31:28,628] [pool-1-thread-12] Initializing /data/converted/joseph/E-2009_0022.tif: [testng] 03:31:28,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:31:28,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:31:28,629 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-23_03-31-28.log] [testng] 03:31:28,630 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25bb9f8a - End of configuration. [testng] [2025-03-23 03:31:36,904] [pool-1-thread-11] Initializing /data/converted/lior/live+cf5b.tif: [testng] 03:31:36,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:31:36,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:31:36,905 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-23_03-31-36.log] [testng] 03:31:36,906 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6358d1a8 - End of configuration. [testng] [2025-03-23 03:31:42,776] [pool-1-thread-10] Initializing /data/converted/michel/e.tif: [testng] 03:31:42,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:31:42,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:31:42,777 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-23_03-31-42.log] [testng] 03:31:42,777 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40655c91 - End of configuration. [testng] [2025-03-23 03:31:49,233] [pool-1-thread-9] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif: [testng] 03:31:49,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:31:49,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:31:49,234 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-23_03-31-49.log] [testng] 03:31:49,235 |-INFO in ch.qos.logback.core.sift.SiftProcessor@242584b0 - End of configuration. [testng] [2025-03-23 03:31:56,108] [pool-1-thread-8] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif: [testng] 03:31:56,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:31:56,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:31:56,109 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-23_03-31-56.log] [testng] 03:31:56,109 |-INFO in ch.qos.logback.core.sift.SiftProcessor@168f10e7 - End of configuration. [testng] [2025-03-23 03:32:02,271] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif: [testng] 03:32:02,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:32:02,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:32:02,272 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-23_03-32-02.log] [testng] 03:32:02,272 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49c75b67 - End of configuration. [testng] [2025-03-23 03:32:09,177] [pool-1-thread-6] Initializing /data/scott/Slide133-08.tif: [testng] 03:32:09,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:32:09,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:32:09,178 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-23_03-32-09.log] [testng] 03:32:09,178 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e8adef1 - End of configuration. [testng] [2025-03-23 03:32:15,882] [pool-1-thread-5] Initializing /data/converted/othmar/z-stack.tif: [testng] 03:32:15,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:32:15,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:32:15,883 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-23_03-32-15.log] [testng] 03:32:15,883 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19ebe81d - End of configuration. [testng] [2025-03-23 03:32:24,035] [pool-1-thread-4] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif: [testng] 03:32:24,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:32:24,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:32:24,036 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-23_03-32-24.log] [testng] 03:32:24,036 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a0cd58 - End of configuration. [testng] [2025-03-23 03:32:32,015] [pool-1-thread-3] Initializing /data/converted/converted/2chzt.tif: [testng] 03:32:32,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:32:32,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:32:32,016 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-23_03-32-32.log] [testng] 03:32:32,016 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c9e8d7d - End of configuration. [testng] [2025-03-23 03:32:39,884] [pool-1-thread-2] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif: [testng] 03:32:39,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:32:39,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:32:39,884 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-23_03-32-39.log] [testng] 03:32:39,885 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41b5f3de - End of configuration. [testng] [2025-03-23 03:34:29,931] [pool-1-thread-1] Initializing /data/converted/darren/section0002_w1.tif: [testng] [2025-03-23 03:34:37,397] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif: [testng] [2025-03-23 03:34:43,335] [pool-1-thread-6] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif: [testng] [2025-03-23 03:35:21,098] [pool-1-thread-8] Initializing /data/converted/vladan/vladan.tif: [testng] [2025-03-23 03:36:22,956] [pool-1-thread-11] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif: [testng] [2025-03-23 03:36:38,487] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif: [testng] [2025-03-23 03:37:09,158] [pool-1-thread-10] Initializing /data/converted/michel/b.tif: [testng] [2025-03-23 03:38:05,558] [pool-1-thread-6] Initializing /data/converted/markus/30channels_exposure-series.tif: [testng] [2025-03-23 03:38:13,589] [pool-1-thread-11] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif: [testng] [2025-03-23 03:39:51,084] [pool-1-thread-10] Initializing /data/converted/rolf/example_1-2010_11_25.tif: [testng] [2025-03-23 03:41:04,952] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif: [testng] [2025-03-23 03:41:57,980] [pool-1-thread-10] Initializing /data/converted/othmar/mozaic.tif: [testng] [2025-03-23 03:48:14,418] [pool-1-thread-6] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif: [testng] [2025-03-23 04:00:15,361] [pool-1-thread-10] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif: [testng] [2025-03-23 04:02:51,811] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif: [testng] [2025-03-23 04:03:02,685] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif: [testng] [2025-03-23 04:06:18,774] [pool-1-thread-11] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif: [testng] [2025-03-23 04:07:10,352] [pool-1-thread-7] Initializing /data/converted/strand/2Colors1Plane.tif: [testng] [2025-03-23 04:10:08,119] [pool-1-thread-2] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif: [testng] [2025-03-23 04:10:38,797] [pool-1-thread-1] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif: [testng] [2025-03-23 04:11:12,795] [pool-1-thread-7] Initializing /data/converted/stephan/notok2.tif: [testng] [2025-03-23 04:12:59,724] [pool-1-thread-9] Initializing /data/dorai/F_ZImage10_(X10)_C.tif: [testng] [2025-03-23 04:15:21,592] [pool-1-thread-9] Initializing /data/converted/eirinn/demo-tile.tif: [testng] [2025-03-23 04:18:43,594] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif: [testng] [2025-03-23 04:19:13,022] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif: [testng] [2025-03-23 04:20:12,868] [pool-1-thread-7] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif: [testng] [2025-03-23 04:26:23,270] [pool-1-thread-1] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif: [testng] [2025-03-23 04:27:50,007] [pool-1-thread-10] Initializing /data/converted/dan/zstack_convalaria.tif: [testng] [2025-03-23 04:30:00,526] [pool-1-thread-10] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif: [testng] [2025-03-23 04:32:34,984] [pool-1-thread-8] Initializing /data/converted/stephan/notok1.tif: [testng] [2025-03-23 04:35:21,983] [pool-1-thread-6] Initializing /data/scott/Slide133-01.tif: [testng] [2025-03-23 04:36:04,657] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif: [testng] [2025-03-23 04:36:54,869] [pool-1-thread-6] Initializing /data/samples/mri-stack/mri-stack.tif: [testng] [2025-03-23 04:38:14,647] [pool-1-thread-6] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif: [testng] [2025-03-23 04:39:25,182] [pool-1-thread-8] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif: [testng] [2025-03-23 04:40:30,163] [pool-1-thread-6] Initializing /data/converted/darren/section0001_w1.tif: [testng] [2025-03-23 04:41:13,568] [pool-1-thread-4] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif: [testng] [2025-03-23 04:42:11,277] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif: [testng] [2025-03-23 04:43:57,472] [pool-1-thread-4] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif: [testng] [2025-03-23 04:45:32,909] [pool-1-thread-4] Initializing /data/converted/markus/Mouse-newborn-panorama.tif: [testng] [2025-03-23 04:46:41,543] [pool-1-thread-9] Initializing /data/othmar/mozaic.tif: [testng] [2025-03-23 04:47:11,546] [pool-1-thread-12] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif: [testng] [2025-03-23 04:48:01,576] [pool-1-thread-4] Initializing /data/converted/karsten/Bild1.tif: [testng] [2025-03-23 04:48:26,456] [pool-1-thread-2] Initializing /data/converted/lior/live+cf2b.tif: [testng] [2025-03-23 04:48:38,835] [pool-1-thread-12] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif: [testng] [2025-03-23 04:50:20,922] [pool-1-thread-4] Initializing /data/converted/rolf/example_2-2010_11_25.tif: [testng] [2025-03-23 04:51:36,250] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif: [testng] [2025-03-23 04:52:23,158] [pool-1-thread-4] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif: [testng] [2025-03-23 04:53:45,073] [pool-1-thread-1] Initializing /data/converted/michel/d.tif: [testng] [2025-03-23 04:55:13,148] [pool-1-thread-4] Initializing /data/converted/karsten/Bild2.tif: [testng] [2025-03-23 04:56:02,345] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif: [testng] [2025-03-23 04:57:45,982] [pool-1-thread-4] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif: [testng] [2025-03-23 04:59:30,814] [pool-1-thread-4] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif: [testng] [2025-03-23 05:01:32,060] [pool-1-thread-9] Initializing /data/converted/dietmar/dapi-texasred-0015.tif: [testng] [2025-03-23 05:06:52,251] [pool-1-thread-5] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif: [testng] 05:09:12,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:09:12,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:09:12,601 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-23_05-09-12.log] [testng] 05:09:12,602 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bba468a - End of configuration. [testng] [2025-03-23 05:10:14,149] [pool-1-thread-6] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif: [testng] [2025-03-23 05:12:11,284] [pool-1-thread-5] Initializing /data/converted/dietmar/137.tif: [testng] [2025-03-23 05:20:13,010] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif: [testng] [2025-03-23 05:22:45,746] [pool-1-thread-11] Initializing /data/converted/converted/damian-compressed.tif: [testng] [2025-03-23 05:24:21,927] [pool-1-thread-11] Initializing /data/converted/jeffrey/750-30-03.tif: [testng] [2025-03-23 05:24:35,478] [pool-1-thread-9] Initializing /data/converted/monica/Monica_elegans_movie.tif: [testng] [2025-03-23 05:25:57,119] [pool-1-thread-6] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif: [testng] [2025-03-23 05:26:32,980] [pool-1-thread-11] Initializing /data/converted/dan/adultnr1.tif: [testng] [2025-03-23 05:27:09,556] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif: [testng] [2025-03-23 05:28:08,452] [pool-1-thread-6] Initializing /data/converted/joseph/E-2009-0001a.tif: [testng] [2025-03-23 05:30:26,647] [pool-1-thread-12] Initializing /data/converted/converted/2chz.tif: [testng] [2025-03-23 05:30:33,901] [pool-1-thread-11] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif: [testng] 05:33:36,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:33:36,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:33:36,250 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-23_05-33-36.log] [testng] 05:33:36,251 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5af3819c - End of configuration. [testng] 05:36:32,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:36:32,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:36:32,073 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-23_05-36-32.log] [testng] 05:36:32,074 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24080f1e - End of configuration. [testng] [2025-03-23 05:42:32,836] [pool-1-thread-5] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif: [testng] [2025-03-23 05:43:55,147] [pool-1-thread-12] Initializing /data/converted/converted/mri-stack.tif: [testng] [2025-03-23 05:45:37,160] [pool-1-thread-12] Initializing /data/converted/kelsey/432x342BW.tif: [testng] [2025-03-23 05:46:13,098] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif: [testng] [2025-03-23 05:47:14,513] [pool-1-thread-12] Initializing /data/converted/dietmar/138.tif: [testng] [2025-03-23 05:47:29,668] [pool-1-thread-3] Initializing /data/converted/rachel/40K 30s A1.tif: [testng] [2025-03-23 05:49:42,949] [pool-1-thread-3] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif: [testng] [2025-03-23 05:50:24,747] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif: [testng] [2025-03-23 05:50:57,675] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif: [testng] [2025-03-23 05:51:05,412] [pool-1-thread-2] Initializing /data/converted/kelsey/1300x1030BW.tif: [testng] [2025-03-23 05:52:42,885] [pool-1-thread-2] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif: [testng] [2025-03-23 06:00:11,400] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif: [testng] [2025-03-23 06:02:42,707] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif: [testng] [2025-03-23 06:05:56,691] [pool-1-thread-6] Initializing /data/converted/kelsey/650x514BW.tif: [testng] 06:07:04,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 06:07:04,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:07:04,208 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-23_06-07-04.log] [testng] 06:07:04,208 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61503acc - End of configuration. [testng] [2025-03-23 06:07:27,854] [pool-1-thread-6] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif: [testng] [2025-03-23 06:12:39,843] [pool-1-thread-11] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif: [testng] [2025-03-23 06:15:22,297] [pool-1-thread-12] Initializing /data/converted/michel/c.tif: [testng] [2025-03-23 06:17:42,864] [pool-1-thread-12] Initializing /data/converted/converted/damian.tif: [testng] [2025-03-23 06:19:04,785] [pool-1-thread-7] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif: [testng] [2025-03-23 06:19:19,376] [pool-1-thread-12] Initializing /data/converted/joseph/E-2009-0004.tif: [testng] [2025-03-23 06:19:47,637] [pool-1-thread-8] Initializing /data/converted/michel/a.tif: [testng] [2025-03-23 06:20:07,560] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif: [testng] [2025-03-23 06:20:28,446] [pool-1-thread-3] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif: [testng] [2025-03-23 06:21:19,810] [pool-1-thread-8] Initializing /data/converted/markus/HighSpeedParas.tif: [testng] [2025-03-23 06:21:53,927] [pool-1-thread-6] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif: [testng] [2025-03-23 06:22:40,609] [pool-1-thread-5] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif: [testng] [2025-03-23 06:27:17,268] [pool-1-thread-1] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif: [testng] [2025-03-23 06:28:40,915] [pool-1-thread-1] Initializing /data/converted/karsten/247096n3s3s9.tif: [testng] 06:29:32,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 06:29:32,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:29:32,145 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-23_06-29-32.log] [testng] 06:29:32,146 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6920185f - End of configuration. [testng] [2025-03-23 06:31:54,990] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif: [testng] [2025-03-23 06:32:08,067] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif: [testng] [2025-03-23 06:36:10,160] [pool-1-thread-1] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif: [testng] [2025-03-23 06:37:46,493] [pool-1-thread-5] Initializing /data/converted/nicolas/image.tif: [testng] [2025-03-23 06:38:40,454] [pool-1-thread-7] Initializing /data/converted/sebastien/F1.tif: [testng] [2025-03-23 06:39:03,257] [pool-1-thread-5] Initializing /data/converted/rachel/40K 30s A2.tif: [testng] [2025-03-23 06:40:52,251] [pool-1-thread-10] Initializing /data/converted/susan/BY4741NQ2.tif: [testng] [2025-03-23 06:40:58,169] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif: [testng] [2025-03-23 06:42:41,331] [pool-1-thread-10] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif: [testng] [2025-03-23 06:48:11,251] [pool-1-thread-11] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif: [testng] [2025-03-23 06:50:17,232] [pool-1-thread-12] Initializing /data/scott/Slide133-04.tif: [testng] [2025-03-23 06:50:29,198] [pool-1-thread-7] Initializing /data/converted/markus/Long_TL_CElegans.tif: [testng] [2025-03-23 06:51:11,188] [pool-1-thread-10] Initializing /data/converted/thomas/test_axiocam_3_1.tif: [testng] [2025-03-23 06:51:44,209] [pool-1-thread-12] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif: [testng] [2025-03-23 06:52:03,358] [pool-1-thread-3] Initializing /data/converted/sebastien/test.tif: [testng] [2025-03-23 06:53:02,060] [pool-1-thread-10] Initializing /data/scott/Slide133-11.tif: [testng] [2025-03-23 06:53:50,414] [pool-1-thread-6] Initializing /data/converted/david/snap-181518-0001.tif: [testng] [2025-03-23 06:54:30,579] [pool-1-thread-10] Initializing /data/converted/miso/Aufnahme-184058-0002.tif: [testng] 08:23:30,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:23:30,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:23:30,055 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-23_08-23-30.log] [testng] 08:23:30,055 |-INFO in ch.qos.logback.core.sift.SiftProcessor@125952d5 - End of configuration. [testng] 09:42:41,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 09:42:41,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:42:41,136 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-23_09-42-41.log] [testng] 09:42:41,136 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54b59ab3 - End of configuration. [testng] 09:46:48,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 09:46:48,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:46:48,957 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-23_09-46-48.log] [testng] 09:46:48,958 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5634f627 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 6625, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 407 minutes 40 seconds Finished: SUCCESS