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Started by upstream project "BIOFORMATS-test-repo" build number 389 originally caused by: Started by upstream project "Trigger" build number 412 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10 [BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins14788651442863420552.sh + '[' microct = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_61501_merge_ci -v /uod/idr/repos/curated/microct:/data -v /uod/idr-scratch/merge-ci/curated/microct:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:28:41,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:28:41,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:28:41,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:28:41,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:28:41,528 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:28:41,528 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:28:41,529 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:28:41,529 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:28:41,529 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7e0b85f9 - End of configuration. [testng] 00:28:41,530 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6a28ffa4 - Registering current configuration as safe fallback point [testng] 00:28:41,530 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48ae9b55 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 436 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-24 00:28:41,542] [main] java.version = 1.8.0_342 [testng] 00:28:41,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:28:41,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:41,623 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-24_00-28-41.log] [testng] 00:28:41,626 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-24 00:28:41,630] [main] testng.directory = /data [testng] [2025-03-24 00:28:41,631] [main] testng.configDirectory = /config [testng] [2025-03-24 00:28:41,650] [main] testng.multiplier = 1.0 [testng] [2025-03-24 00:28:41,651] [main] testng.in-memory = false [testng] [2025-03-24 00:28:41,651] [main] testng.allow-missing = false [testng] [2025-03-24 00:28:41,651] [main] user.language = fr [testng] [2025-03-24 00:28:41,651] [main] user.country = FR [testng] [2025-03-24 00:28:41,651] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-24 00:28:49,390] [main] ---------------------------------------- [testng] [2025-03-24 00:28:49,390] [main] Total files: 53 [testng] [2025-03-24 00:28:49,390] [main] Scan time: 7.739 s (146 ms/file) [testng] [2025-03-24 00:28:49,390] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 53 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-24 00:30:39,736] [pool-1-thread-1] Initializing /data/samples/hox-wt-2005050501-hand/hox-wt-20050505-01-hand.vff: [testng] 00:30:39,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:30:39,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:39,737 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-24_00-30-39.log] [testng] 00:30:39,738 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f007ae1 - End of configuration. [testng] [2025-03-24 00:30:41,655] [pool-1-thread-12] Initializing /data/samples/hox_wt_2005041301/hox-wt-04132005.vff: [testng] 00:30:41,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:30:41,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:41,657 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-24_00-30-41.log] [testng] 00:30:41,657 |-INFO in ch.qos.logback.core.sift.SiftProcessor@230dcb67 - End of configuration. [testng] [2025-03-24 00:30:43,308] [pool-1-thread-11] Initializing /data/samples/hox_wt_2005041501/hox-wt-04152005.vff: [testng] 00:30:43,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:30:43,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:43,310 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-24_00-30-43.log] [testng] 00:30:43,311 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75695ac3 - End of configuration. [testng] [2025-03-24 00:30:45,063] [pool-1-thread-10] Initializing /data/samples/hox-wt-2005042601-hand/hox-wt-2005042601-hand.vff: [testng] 00:30:45,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:30:45,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:45,064 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-24_00-30-45.log] [testng] 00:30:45,064 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23755da5 - End of configuration. [testng] [2025-03-24 00:30:47,039] [pool-1-thread-9] Initializing /data/samples/Mouse_Hand_2004010700/Mouse_Hand_2004010700.vff: [testng] 00:30:47,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:30:47,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:47,041 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-24_00-30-47.log] [testng] 00:30:47,041 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3deeae8b - End of configuration. [testng] [2025-03-24 00:30:49,450] [pool-1-thread-8] Initializing /data/samples/hox_wt_2005040501/hox-wt-04052005-a.vff: [testng] 00:30:49,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:30:49,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:49,451 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-24_00-30-49.log] [testng] 00:30:49,452 |-INFO in ch.qos.logback.core.sift.SiftProcessor@375f7b74 - End of configuration. [testng] [2025-03-24 00:30:51,221] [pool-1-thread-7] Initializing /data/samples/hox-wt-2005050902-humerus/hox-wt-20050509-02-humerus.vff: [testng] 00:30:51,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:30:51,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:51,222 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-24_00-30-51.log] [testng] 00:30:51,222 |-INFO in ch.qos.logback.core.sift.SiftProcessor@556bf4a - End of configuration. [testng] [2025-03-24 00:30:53,409] [pool-1-thread-6] Initializing /data/samples/hox-wt-2005042201-humerus/hox-wt-2005042201-humerus.vff: [testng] 00:30:53,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:30:53,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:53,410 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-24_00-30-53.log] [testng] 00:30:53,411 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28541b46 - End of configuration. [testng] [2025-03-24 00:30:55,068] [pool-1-thread-5] Initializing /data/samples/hox-wt-2005050901-humerus/hox-wt-20050509-01-humerus.vff: [testng] 00:30:55,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:30:55,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:55,069 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-24_00-30-55.log] [testng] 00:30:55,069 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b9fc782 - End of configuration. [testng] [2025-03-24 00:30:56,926] [pool-1-thread-4] Initializing /data/samples/hox-wt-2005050201-humerus/hox-wt-20050502-01-humerus.vff: [testng] 00:30:56,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:30:56,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:56,926 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-24_00-30-56.log] [testng] 00:30:56,927 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37447c4b - End of configuration. [testng] [2025-03-24 00:30:58,507] [pool-1-thread-3] Initializing /data/samples/hox-wt-2005042101-humerus/hox-wt-2005042101-humerus.vff: [testng] 00:30:58,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:30:58,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:58,508 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-24_00-30-58.log] [testng] 00:30:58,509 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c40181f - End of configuration. [testng] [2025-03-24 00:31:00,136] [pool-1-thread-2] Initializing /data/samples/hox_wt_2005041401/hox-wt-04142005.vff: [testng] 00:31:00,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:31:00,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:00,136 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-24_00-31-00.log] [testng] 00:31:00,137 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ed47ee7 - End of configuration. [testng] [2025-03-24 00:31:47,750] [pool-1-thread-4] Initializing /data/samples/Ping_1_2003112000/Ping_1_2003112000.vff: [testng] [2025-03-24 00:31:54,289] [pool-1-thread-8] Initializing /data/samples/hox-wt-2005050901-hand/hox-wt-20050509-01-hand.vff: [testng] [2025-03-24 00:31:57,760] [pool-1-thread-5] Initializing /data/samples/hox-wt-2005050902-hand/hox-wt-20050509-02-hand.vff: [testng] [2025-03-24 00:32:00,978] [pool-1-thread-1] Initializing /data/samples/hox-wt-2005042201-hand/hox-wt-2005042201-hand.vff: [testng] [2025-03-24 00:32:03,260] [pool-1-thread-3] Initializing /data/samples/hox-wt-2005050201-hand/hox-wt-20050502-01-hand.vff: [testng] [2025-03-24 00:32:05,321] [pool-1-thread-12] Initializing /data/samples/hox-wt-2005050501-humerus/hox-wt-20050505-01-humerus.vff: [testng] [2025-03-24 00:32:07,670] [pool-1-thread-11] Initializing /data/samples/mouse_skull_93um/mouse_skull_93um.vff: [testng] [2025-03-24 00:32:10,066] [pool-1-thread-6] Initializing /data/samples/hox-wt-2005050903-hand/hox-wt-20050509-03-hand.vff: [testng] [2025-03-24 00:32:12,524] [pool-1-thread-10] Initializing /data/samples/hox-wt-2005050903-humerus/hox-wt-20050509-03-humerus.vff: [testng] [2025-03-24 00:32:14,892] [pool-1-thread-2] Initializing /data/samples/Statuette_2003112100/Statuette_2003112100.vff: [testng] [2025-03-24 00:32:17,369] [pool-1-thread-7] Initializing /data/samples/hox-wt-2005050904-hand/hox-wt-20050509-04-hand.vff: [testng] [2025-03-24 00:32:18,475] [pool-1-thread-9] Initializing /data/samples/hox-wt-2005042301-humerus/hox-wt-2005042301-humerus.vff: [testng] [2025-03-24 00:32:52,295] [pool-1-thread-11] Initializing /data/samples/Almond_Kiss_2003112600/Almond_Kiss_2003112600.vff: [testng] [2025-03-24 00:32:58,793] [pool-1-thread-8] Initializing /data/samples/hox-wt-2005042301-hand/hox-wt-2005042301-hand.vff: [testng] [2025-03-24 00:33:04,006] [pool-1-thread-7] Initializing /data/samples/hox-wt-2005050904-humerus/hox-wt-20050509-04-humerus.vff: [testng] [2025-03-24 00:33:07,564] [pool-1-thread-6] Initializing /data/samples/hox-wt-2005042701-humerus/hox-wt-2005042701-humerus.vff: [testng] [2025-03-24 00:33:10,182] [pool-1-thread-5] Initializing /data/samples/hox-wt-2005050801-humerus/hox-wt-20050508-01-humerus.vff: [testng] [2025-03-24 00:33:12,160] [pool-1-thread-1] Initializing /data/samples/Mouse_Hand_2004010900/Mouse_Hand_2004010900.vff: [testng] [2025-03-24 00:33:12,987] [pool-1-thread-9] Initializing /data/samples/hox_wt_2005040401/hox-wt-04042005-a.vff: [testng] [2025-03-24 00:33:14,278] [pool-1-thread-10] Initializing /data/samples/Bat_Large_2003092500/Bat_Large_2003092500.vff: [testng] [2025-03-24 00:33:15,529] [pool-1-thread-3] Initializing /data/samples/how-wt-2005043001-humerus/how-wt-2005043001-humerus.vff: [testng] [2025-03-24 00:33:16,636] [pool-1-thread-12] Initializing /data/samples/Ping_1_2003112002/Ping_1_2003112002.vff: [testng] [2025-03-24 00:33:18,397] [pool-1-thread-2] Initializing /data/samples/hox_wt_2005041101/hox-wt-04112005-a.vff: [testng] [2025-03-24 00:33:19,780] [pool-1-thread-4] Initializing /data/samples/hox-wt-2005042101-hand/hox-wt-2005042101-hand.vff: [testng] [2025-03-24 00:34:08,696] [pool-1-thread-3] Initializing /data/samples/Hersheys_Kiss_2003120100/Hersheys_Kiss_2003120100.vff: [testng] [2025-03-24 00:34:13,663] [pool-1-thread-6] Initializing /data/samples/Chick_Embryo_2003121201/Chick_Embryo_2003121201.vff: [testng] [2025-03-24 00:34:19,864] [pool-1-thread-5] Initializing /data/samples/Bat_Small_2003092500/Bat_Small_2003092500.vff: [testng] [2025-03-24 00:34:23,549] [pool-1-thread-8] Initializing /data/samples/hox-wt-2005050801-hand/hox-wt-20050508-01-hand.vff: [testng] [2025-03-24 00:34:25,308] [pool-1-thread-7] Initializing /data/samples/Chick_Embryo_2003121700/Chick_Embryo_2003121700.vff: [testng] [2025-03-24 00:34:27,276] [pool-1-thread-4] Initializing /data/samples/hox-wt-2005042601-humerus/hox-wt-2005042601-humerus.vff: [testng] [2025-03-24 00:34:28,847] [pool-1-thread-11] Initializing /data/samples/Pepper_2003112000/Pepper_2003112000.vff: [testng] [2025-03-24 00:34:30,537] [pool-1-thread-9] Initializing /data/samples/how-wt-2005043001/how-wt-2005043001-hand.vff: [testng] [2025-03-24 00:34:32,573] [pool-1-thread-2] Initializing /data/samples/hox_wt_2005042701/hox-wt-2005042701-hand.vff: [testng] [2025-03-24 00:34:34,188] [pool-1-thread-12] Initializing /data/samples/hox_wt_2005040701/hox-wt-04072005-a.vff: [testng] [2025-03-24 00:34:35,855] [pool-1-thread-1] Initializing /data/samples/Mouse_Hand_2004011200/Mouse_Hand_2004011200.vff: [testng] [2025-03-24 00:34:37,571] [pool-1-thread-10] Initializing /data/samples/hox_wt_2005041201/hox-wt-04122005.vff: [testng] [2025-03-24 00:35:32,863] [pool-1-thread-4] Initializing /data/samples/orig.Mouse_Hand_2004010900/Mouse_Hand_2004010900.vff: [testng] [2025-03-24 00:35:38,883] [pool-1-thread-10] Initializing /data/samples/Mouse_Hand_2004010701/Mouse_Hand_2004010701.vff: [testng] [2025-03-24 00:35:45,158] [pool-1-thread-2] Initializing /data/samples/Mouse_ankle_2003091500/AnkleJoint21umvoxels.vff: [testng] [2025-03-24 00:35:49,854] [pool-1-thread-8] Initializing /data/samples/Ping_1_2003112001/Ping_1_2003112001.vff: [testng] [2025-03-24 00:35:53,870] [pool-1-thread-9] Initializing /data/samples/Chick_Embryo_2003121200/Chick_Embryo_2003121200.vff: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 2809, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 7 minutes 58 seconds Finished: SUCCESS