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Started by upstream project "BIOFORMATS-test-repo" build number 389 originally caused by: Started by upstream project "Trigger" build number 412 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@11 [BIOFORMATS-test-folder@11] $ /bin/bash -xe /tmp/jenkins4291421415023649986.sh + '[' bmp = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_61512_merge_ci -v /uod/idr/repos/curated/bmp:/data -v /uod/idr-scratch/merge-ci/curated/bmp:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:29:20,118 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:29:20,121 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 00:29:20,121 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:29:20,123 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:29:20,123 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:29:20,123 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:29:20,124 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:29:20,124 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:29:20,124 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:29:20,125 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:29:20,125 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:29:20,125 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:29:20,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:29:20,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:29:20,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:29:20,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:29:20,443 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:29:20,443 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:29:20,443 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:29:20,444 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:29:20,444 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 00:29:20,445 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 00:29:20,445 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 321 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-24 00:29:20,464] [main] java.version = 1.8.0_342 [testng] 00:29:20,470 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:29:20,470 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:20,526 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-24_00-29-20.log] [testng] 00:29:20,529 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-24 00:29:20,531] [main] testng.directory = /data [testng] [2025-03-24 00:29:20,531] [main] testng.configDirectory = /config [testng] [2025-03-24 00:29:20,547] [main] testng.multiplier = 1.0 [testng] [2025-03-24 00:29:20,548] [main] testng.in-memory = false [testng] [2025-03-24 00:29:20,548] [main] testng.allow-missing = false [testng] [2025-03-24 00:29:20,548] [main] user.language = fr [testng] [2025-03-24 00:29:20,548] [main] user.country = FR [testng] [2025-03-24 00:29:20,548] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-24 00:29:22,128] [main] ---------------------------------------- [testng] [2025-03-24 00:29:22,129] [main] Total files: 31 [testng] [2025-03-24 00:29:22,129] [main] Scan time: 1.58 s (50 ms/file) [testng] [2025-03-24 00:29:22,129] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 31 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-24 00:29:35,843] [pool-1-thread-1] Initializing /data/bk/100427RBTLPC_FD3__A___5_T_001_ch_00_image_00025_Z_001.bmp: [testng] 00:29:35,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:29:35,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:35,846 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-24_00-29-35.log] [testng] 00:29:35,846 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68231e58 - End of configuration. [testng] [2025-03-24 00:29:36,200] [pool-1-thread-12] Initializing /data/brian/images/raw_a_rg.tiff: [testng] 00:29:36,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:29:36,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:36,201 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-24_00-29-36.log] [testng] 00:29:36,202 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b62eaa7 - End of configuration. [testng] [2025-03-24 00:29:38,960] [pool-1-thread-11] Initializing /data/dennis/kidney_TFl_Eight.bmp: [testng] 00:29:38,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:29:38,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:38,961 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-24_00-29-38.log] [testng] 00:29:38,961 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e01fb27 - End of configuration. [testng] [2025-03-24 00:29:39,190] [pool-1-thread-10] Initializing /data/stephane/holo0908.bmp: [testng] 00:29:39,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:29:39,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:39,191 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-24_00-29-39.log] [testng] 00:29:39,191 |-INFO in ch.qos.logback.core.sift.SiftProcessor@97933d3 - End of configuration. [testng] [2025-03-24 00:29:39,385] [pool-1-thread-9] Initializing /data/brian/images/kidney_TFl_1_greyscale.bmp: [testng] 00:29:39,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:29:39,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:39,387 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-24_00-29-39.log] [testng] 00:29:39,388 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d53fff1 - End of configuration. [testng] [2025-03-24 00:29:39,567] [pool-1-thread-8] Initializing /data/big-images/6kx6k-grey.bmp: [testng] 00:29:39,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:29:39,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:39,567 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-24_00-29-39.log] [testng] 00:29:39,568 |-INFO in ch.qos.logback.core.sift.SiftProcessor@aad8511 - End of configuration. [testng] [2025-03-24 00:29:39,808] [pool-1-thread-7] Initializing /data/brian/images/kidney_TFl_1.bmp: [testng] 00:29:39,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:29:39,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:39,809 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-24_00-29-39.log] [testng] 00:29:39,810 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6015eb94 - End of configuration. [testng] [2025-03-24 00:29:40,045] [pool-1-thread-6] Initializing /data/bk/ch_00.bmp: [testng] 00:29:40,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:29:40,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:40,046 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-24_00-29-40.log] [testng] 00:29:40,047 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71f80340 - End of configuration. [testng] [2025-03-24 00:29:40,297] [pool-1-thread-5] Initializing /data/curtis/image2.bmp: [testng] 00:29:40,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:29:40,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:40,298 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-24_00-29-40.log] [testng] 00:29:40,299 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3572de15 - End of configuration. [testng] [2025-03-24 00:29:40,573] [pool-1-thread-4] Initializing /data/big-images/8kx8k-grey.bmp: [testng] 00:29:40,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:29:40,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:40,575 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-24_00-29-40.log] [testng] 00:29:40,575 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75fdbc40 - End of configuration. [testng] [2025-03-24 00:29:40,987] [pool-1-thread-3] Initializing /data/dennis/kidney_TFl_Nine.bmp: [testng] 00:29:40,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:29:40,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:40,988 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-24_00-29-40.log] [testng] 00:29:40,989 |-INFO in ch.qos.logback.core.sift.SiftProcessor@104c20aa - End of configuration. [testng] [2025-03-24 00:29:41,287] [pool-1-thread-2] Initializing /data/curtis/image4.bmp: [testng] 00:29:41,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:29:41,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:41,289 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-24_00-29-41.log] [testng] 00:29:41,289 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bdca26c - End of configuration. [testng] [2025-03-24 00:29:45,835] [pool-1-thread-5] Initializing /data/dennis/kidney_TFl_Two.bmp: [testng] [2025-03-24 00:29:46,059] [pool-1-thread-3] Initializing /data/qa-4538/22577136_Figure 2_A_ATF6 (GST)_13572.bmp: [testng] [2025-03-24 00:29:46,289] [pool-1-thread-7] Initializing /data/curtis/image5.bmp: [testng] [2025-03-24 00:29:46,496] [pool-1-thread-9] Initializing /data/dennis/kidney_TFl_One.bmp: [testng] [2025-03-24 00:29:46,680] [pool-1-thread-2] Initializing /data/curtis/image1.bmp: [testng] [2025-03-24 00:29:46,863] [pool-1-thread-11] Initializing /data/dennis/kidney_TFl_Seven.bmp: [testng] [2025-03-24 00:29:47,070] [pool-1-thread-6] Initializing /data/big-images/6kx6k.bmp: [testng] [2025-03-24 00:29:47,311] [pool-1-thread-10] Initializing /data/dennis/kidney_TFl_Six.bmp: [testng] [2025-03-24 00:29:47,520] [pool-1-thread-1] Initializing /data/brian/images/raw_a_rg.bmp: [testng] [2025-03-24 00:29:51,322] [pool-1-thread-8] Initializing /data/brian/images/23srp5dksub.bmp: [testng] [2025-03-24 00:29:51,549] [pool-1-thread-7] Initializing /data/dennis/kidney_TFl_Three.bmp: [testng] [2025-03-24 00:29:51,808] [pool-1-thread-1] Initializing /data/dennis/kidney_TFl_Four.bmp: [testng] [2025-03-24 00:29:52,053] [pool-1-thread-2] Initializing /data/curtis/image3.bmp: [testng] [2025-03-24 00:29:52,318] [pool-1-thread-9] Initializing /data/ticket-12971/foo.bmp: [testng] [2025-03-24 00:29:52,568] [pool-1-thread-5] Initializing /data/dennis/kidney_TFl_Five.bmp: [testng] [2025-03-24 00:29:52,831] [pool-1-thread-11] Initializing /data/brian/images/raw_a.bmp: [testng] [2025-03-24 00:29:53,165] [pool-1-thread-10] Initializing /data/big-images/8kx8k.bmp: [testng] [2025-03-24 00:29:54,220] [pool-1-thread-3] Initializing /data/frank/cell_mask_error.bmp: [testng] [2025-03-24 00:29:56,363] [pool-1-thread-9] Initializing /data/brian/images/DMSOHigh_001.bmp: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1643, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 56 seconds Finished: SUCCESS