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Started by upstream project "BIOFORMATS-test-repo" build number 389 originally caused by: Started by upstream project "Trigger" build number 412 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@15 [BIOFORMATS-test-folder@15] $ /bin/bash -xe /tmp/jenkins1359125979015816296.sh + '[' specs = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_61514_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:29:30,853 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:29:30,855 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 00:29:30,855 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:29:30,856 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:29:30,856 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:29:30,856 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:29:30,856 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:29:30,856 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:29:30,857 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:29:30,857 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:29:30,857 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:29:30,857 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:29:31,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:29:31,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:29:31,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:29:31,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:29:31,147 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:29:31,147 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:29:31,147 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:29:31,148 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:29:31,148 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 00:29:31,149 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 00:29:31,149 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 292 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-24 00:29:31,159] [main] java.version = 1.8.0_342 [testng] 00:29:31,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:29:31,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:31,208 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-24_00-29-31.log] [testng] 00:29:31,210 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-24 00:29:31,212] [main] testng.directory = /data [testng] [2025-03-24 00:29:31,212] [main] testng.configDirectory = /config [testng] [2025-03-24 00:29:31,224] [main] testng.multiplier = 1.0 [testng] [2025-03-24 00:29:31,224] [main] testng.in-memory = false [testng] [2025-03-24 00:29:31,224] [main] testng.allow-missing = false [testng] [2025-03-24 00:29:31,224] [main] user.language = fr [testng] [2025-03-24 00:29:31,224] [main] user.country = FR [testng] [2025-03-24 00:29:31,225] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-24 00:41:42,960] [main] ---------------------------------------- [testng] [2025-03-24 00:41:42,961] [main] Total files: 226 [testng] [2025-03-24 00:41:42,961] [main] Scan time: 731.735 s (3237 ms/file) [testng] [2025-03-24 00:41:42,961] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 28 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-24 00:53:01,154] [pool-1-thread-1] Initializing /data/fluoview/Sample_XT.tif: [testng] 00:53:01,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:53:01,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:01,156 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-24_00-53-01.log] [testng] 00:53:01,157 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a6ee265 - End of configuration. [testng] [2025-03-24 00:53:03,104] [pool-1-thread-12] Initializing /data/fluoview/SpineAnimation.avi: [testng] 00:53:03,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:53:03,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:03,105 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-24_00-53-03.log] [testng] 00:53:03,106 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f6557de - End of configuration. [testng] [2025-03-24 00:53:03,833] [pool-1-thread-11] Initializing /data/iplab/Blend_Fitc.IPL: [testng] 00:53:03,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:53:03,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:03,834 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-24_00-53-03.log] [testng] 00:53:03,835 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1cc72bd7 - End of configuration. [testng] [2025-03-24 00:53:04,159] [pool-1-thread-10] Initializing /data/iplab/16Bit XRay.IPL: [testng] 00:53:04,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:53:04,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:04,161 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-24_00-53-04.log] [testng] 00:53:04,161 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fe2283 - End of configuration. [testng] [2025-03-24 00:53:04,428] [pool-1-thread-9] Initializing /data/iplab/Color Histology.IPL: [testng] 00:53:04,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:53:04,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:04,430 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-24_00-53-04.log] [testng] 00:53:04,430 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ca216d0 - End of configuration. [testng] [2025-03-24 00:53:04,784] [pool-1-thread-8] Initializing /data/fluoview/Sample_TwoCH.TIF: [testng] 00:53:04,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:53:04,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:04,785 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-24_00-53-04.log] [testng] 00:53:04,785 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d6139a3 - End of configuration. [testng] [2025-03-24 00:53:07,290] [pool-1-thread-7] Initializing /data/fluoview/sample_labled_XYTCh.tif: [testng] 00:53:07,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:53:07,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:07,292 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-24_00-53-07.log] [testng] 00:53:07,293 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48511f05 - End of configuration. [testng] [2025-03-24 00:53:09,213] [pool-1-thread-6] Initializing /data/iplab/Blend_Final.IPL: [testng] 00:53:09,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:53:09,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:09,214 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-24_00-53-09.log] [testng] 00:53:09,215 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48b57759 - End of configuration. [testng] [2025-03-24 00:53:09,589] [pool-1-thread-5] Initializing /data/iplab/Color Image.IPL: [testng] 00:53:09,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:53:09,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:09,590 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-24_00-53-09.log] [testng] 00:53:09,590 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10246454 - End of configuration. [testng] [2025-03-24 00:53:09,964] [pool-1-thread-4] Initializing /data/iplab/3t3 Cell.IPL: [testng] 00:53:09,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:53:09,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:09,965 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-24_00-53-09.log] [testng] 00:53:09,966 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d595d91 - End of configuration. [testng] [2025-03-24 00:53:10,619] [pool-1-thread-3] Initializing /data/iplab/10x Blood and Bacteria.IPL: [testng] 00:53:10,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:53:10,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:10,620 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-24_00-53-10.log] [testng] 00:53:10,620 |-INFO in ch.qos.logback.core.sift.SiftProcessor@137b167 - End of configuration. [testng] [2025-03-24 00:53:11,016] [pool-1-thread-2] Initializing /data/fluoview/SpineAnimation.tif: [testng] 00:53:11,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:53:11,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:11,017 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-24_00-53-11.log] [testng] 00:53:11,017 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bbeb850 - End of configuration. [testng] [2025-03-24 00:53:17,631] [pool-1-thread-4] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: [testng] [2025-03-24 00:53:18,190] [pool-1-thread-9] Initializing /data/fluoview/sample_labled_XYZCh.tif: [testng] [2025-03-24 00:53:20,345] [pool-1-thread-10] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: [testng] [2025-03-24 00:53:22,446] [pool-1-thread-5] Initializing /data/iplab/Blend_Tritc.IPL: [testng] [2025-03-24 00:53:22,828] [pool-1-thread-6] Initializing /data/iplab/Chromosomes.IPL: [testng] [2025-03-24 00:53:23,190] [pool-1-thread-11] Initializing /data/fluoview/sample_labled_XYZTCh.tif: [testng] [2025-03-24 00:53:27,891] [pool-1-thread-3] Initializing /data/iplab/Blend_Dapi.IPL: [testng] [2025-03-24 00:53:30,826] [pool-1-thread-12] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: [testng] [2025-03-24 00:53:36,144] [pool-1-thread-6] Initializing /data/fluoview/Sample_XYZ.TIF: [testng] [2025-03-24 00:53:39,460] [pool-1-thread-5] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: [testng] [2025-03-24 00:53:42,466] [pool-1-thread-3] Initializing /data/iplab/Blend_DIC.IPL: [testng] [2025-03-24 00:53:42,859] [pool-1-thread-4] Initializing /data/fluoview/Sample_ThreeCH.TIF: [testng] [2025-03-24 00:53:44,808] [pool-1-thread-7] Initializing /data/fluoview/Sample_XYT.TIF: [testng] [2025-03-24 00:53:46,622] [pool-1-thread-8] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: [testng] [2025-03-24 00:53:48,181] [pool-1-thread-2] Initializing /data/iplab/Actin.IPL: [testng] [2025-03-24 00:53:48,396] [pool-1-thread-1] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1484, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 24 minutes 43 seconds Finished: SUCCESS