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Started by upstream project "BIOFORMATS-test-repo" build number 390 originally caused by: Started by upstream project "Trigger" build number 414 originally caused by: Started by user devspace Restarted from build #413, stage Bio-Formats Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins1793998800372838004.sh + '[' gatan = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_61654_merge_ci -v /uod/idr/repos/curated/gatan:/data -v /uod/idr-scratch/merge-ci/curated/gatan:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:07:07,441 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 01:07:07,443 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service. [testng] 01:07:07,443 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:07:07,445 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:07:07,445 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:07:07,445 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:07:07,446 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:07:07,446 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:07:07,446 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:07:07,447 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:07:07,447 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:07:07,448 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:07:07,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:07:07,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:07:07,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:07:07,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:07:07,661 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:07:07,661 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:07:07,661 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:07:07,661 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:07:07,661 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration. [testng] 01:07:07,662 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point [testng] 01:07:07,662 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 216 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-25 01:07:07,672] [main] java.version = 11.0.16 [testng] 01:07:07,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:07:07,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:07:07,720 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-25_01-07-07.log] [testng] 01:07:07,721 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration. [testng] [2025-03-25 01:07:07,723] [main] testng.directory = /data [testng] [2025-03-25 01:07:07,724] [main] testng.configDirectory = /config [testng] [2025-03-25 01:07:07,734] [main] testng.multiplier = 1.0 [testng] [2025-03-25 01:07:07,735] [main] testng.in-memory = false [testng] [2025-03-25 01:07:07,735] [main] testng.allow-missing = false [testng] [2025-03-25 01:07:07,735] [main] user.language = en [testng] [2025-03-25 01:07:07,735] [main] user.country = ${user.country} [testng] [2025-03-25 01:07:07,736] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-25 01:07:12,488] [main] ---------------------------------------- [testng] [2025-03-25 01:07:12,488] [main] Total files: 103 [testng] [2025-03-25 01:07:12,488] [main] Scan time: 4.752 s (46 ms/file) [testng] [2025-03-25 01:07:12,488] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 98 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-25 01:07:55,646] [pool-1-thread-1] Initializing /data/thorsten/60kx_HAADF_03.dm3: [testng] 01:07:55,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:07:55,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:07:55,649 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-25_01-07-55.log] [testng] 01:07:55,649 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a11efad - End of configuration. [testng] [2025-03-25 01:07:56,026] [pool-1-thread-12] Initializing /data/ofra/lowloss.dm3: [testng] 01:07:56,026 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:07:56,026 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:07:56,027 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-25_01-07-56.log] [testng] 01:07:56,028 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b958644 - End of configuration. [testng] [2025-03-25 01:07:56,462] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0002.dm4: [testng] 01:07:56,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:07:56,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:07:56,463 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-25_01-07-56.log] [testng] 01:07:56,464 |-INFO in ch.qos.logback.core.sift.SiftProcessor@438f6061 - End of configuration. [testng] [2025-03-25 01:07:56,853] [pool-1-thread-10] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0009.dm4: [testng] 01:07:56,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:07:56,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:07:56,854 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-25_01-07-56.log] [testng] 01:07:56,855 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35d808a3 - End of configuration. [testng] [2025-03-25 01:07:57,247] [pool-1-thread-9] Initializing /data/jay/samples/APC2a-e3.dm3: [testng] 01:07:57,247 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:07:57,247 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:07:57,248 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-25_01-07-57.log] [testng] 01:07:57,249 |-INFO in ch.qos.logback.core.sift.SiftProcessor@644add94 - End of configuration. [testng] [2025-03-25 01:07:57,569] [pool-1-thread-8] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-96x96.tif: [testng] 01:07:57,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:07:57,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:07:57,569 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-25_01-07-57.log] [testng] 01:07:57,570 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1672d9f8 - End of configuration. [testng] [2025-03-25 01:07:59,918] [pool-1-thread-7] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-799x799.tif: [testng] 01:07:59,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:07:59,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:07:59,919 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-25_01-07-59.log] [testng] 01:07:59,919 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642b808a - End of configuration. [testng] [2025-03-25 01:08:01,305] [pool-1-thread-6] Initializing /data/nuno/Prefix_3VBSED_slice_0011.dm3: [testng] 01:08:01,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:08:01,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:08:01,306 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-25_01-08-01.log] [testng] 01:08:01,306 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4db84aa6 - End of configuration. [testng] [2025-03-25 01:08:01,480] [pool-1-thread-5] Initializing /data/samples/mode-metadata/mode_format_test.dm3: [testng] 01:08:01,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:08:01,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:08:01,481 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-25_01-08-01.log] [testng] 01:08:01,481 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bf4aabd - End of configuration. [testng] [2025-03-25 01:08:01,684] [pool-1-thread-4] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0047.dm4: [testng] 01:08:01,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:08:01,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:08:01,685 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-25_01-08-01.log] [testng] 01:08:01,685 |-INFO in ch.qos.logback.core.sift.SiftProcessor@625d44db - End of configuration. [testng] [2025-03-25 01:08:01,916] [pool-1-thread-3] Initializing /data/jay/dnasample1.dm3: [testng] 01:08:01,916 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:08:01,916 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:08:01,917 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-25_01-08-01.log] [testng] 01:08:01,917 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42344517 - End of configuration. [testng] [2025-03-25 01:08:02,245] [pool-1-thread-2] Initializing /data/public/imagesc-36590/SmallMontage0000.dm4: [testng] 01:08:02,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:08:02,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:08:02,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-25_01-08-02.log] [testng] 01:08:02,247 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3728d23c - End of configuration. [testng] [2025-03-25 01:08:07,722] [pool-1-thread-12] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2025-03-25 01:08:09,727] [pool-1-thread-2] Initializing /data/public/imagesc-36590/SmallMontage0001.dm4: [testng] [2025-03-25 01:08:10,003] [pool-1-thread-1] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0052.dm4: [testng] [2025-03-25 01:08:10,355] [pool-1-thread-9] Initializing /data/imagesc-3719/Prefix_BSE_slice_0001.dm4: [testng] [2025-03-25 01:08:11,146] [pool-1-thread-10] Initializing /data/jay/samples/APC2a-e4.tif: [testng] [2025-03-25 01:08:13,624] [pool-1-thread-6] Initializing /data/jay/camtest1.dm3: [testng] [2025-03-25 01:08:13,940] [pool-1-thread-11] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0045.dm4: [testng] [2025-03-25 01:08:14,656] [pool-1-thread-5] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.tif: [testng] [2025-03-25 01:08:17,718] [pool-1-thread-3] Initializing /data/jay/recAmag6500dm.dm3: [testng] [2025-03-25 01:08:20,345] [pool-1-thread-2] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0013.dm4: [testng] [2025-03-25 01:08:26,413] [pool-1-thread-6] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0053.dm4: [testng] [2025-03-25 01:08:26,865] [pool-1-thread-3] Initializing /data/jayne/AM-2/MonGb2-S7.dm3: [testng] [2025-03-25 01:08:27,327] [pool-1-thread-8] Initializing /data/jay/recAmaghi.dm3: [testng] [2025-03-25 01:08:27,694] [pool-1-thread-7] Initializing /data/jayne/AM-2/MonGb2-S8.dm3: [testng] [2025-03-25 01:08:28,240] [pool-1-thread-2] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-363.dm3: [testng] [2025-03-25 01:08:31,024] [pool-1-thread-9] Initializing /data/ofra/Co on INT 28-12-10.11.dm3: [testng] [2025-03-25 01:08:32,490] [pool-1-thread-4] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2025-03-25 01:08:36,449] [pool-1-thread-1] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0048.dm4: [testng] [2025-03-25 01:08:38,185] [pool-1-thread-3] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-480x480.tif: [testng] [2025-03-25 01:08:40,311] [pool-1-thread-10] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-128x128.tif: [testng] [2025-03-25 01:08:42,569] [pool-1-thread-12] Initializing /data/qa-7642/8.dm4: [testng] [2025-03-25 01:08:42,924] [pool-1-thread-11] Initializing /data/public/imagesc-36590/SmallMontage0003.dm4: [testng] [2025-03-25 01:08:43,257] [pool-1-thread-5] Initializing /data/nuno/Prefix_3VBSED_stack_30_slice_0290.dm3: [testng] [2025-03-25 01:08:43,599] [pool-1-thread-9] Initializing /data/jay/Carbon.34.dm3: [testng] [2025-03-25 01:08:44,108] [pool-1-thread-2] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0006.dm4: [testng] [2025-03-25 01:08:44,503] [pool-1-thread-8] Initializing /data/jay/dnasample.tif: [testng] [2025-03-25 01:08:47,550] [pool-1-thread-7] Initializing /data/public/imagesc-36590/SmallMontage0005.dm4: [testng] [2025-03-25 01:08:47,976] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0003.dm4: [testng] [2025-03-25 01:08:49,746] [pool-1-thread-11] Initializing /data/jayne/AM-2/MonGb2-S9.dm3: [testng] [2025-03-25 01:08:51,119] [pool-1-thread-12] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-256x256.tif: [testng] [2025-03-25 01:08:55,290] [pool-1-thread-2] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0046.dm4: [testng] [2025-03-25 01:08:55,830] [pool-1-thread-7] Initializing /data/jay/ViewDMtest.dm3: [testng] [2025-03-25 01:08:56,514] [pool-1-thread-9] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0049.dm4: [testng] [2025-03-25 01:08:57,140] [pool-1-thread-5] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0051.dm4: [testng] [2025-03-25 01:08:57,806] [pool-1-thread-6] Initializing /data/public/imagesc-36590/SmallMontage0004.dm4: [testng] [2025-03-25 01:09:00,383] [pool-1-thread-11] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2025-03-25 01:09:02,711] [pool-1-thread-3] Initializing /data/jay/smallerfile.dm3: [testng] [2025-03-25 01:09:03,168] [pool-1-thread-1] Initializing /data/melissa/annotation-test.tif: [testng] [2025-03-25 01:09:07,707] [pool-1-thread-6] Initializing /data/jay/samples/APC2a-e5.tif: [testng] [2025-03-25 01:09:09,662] [pool-1-thread-10] Initializing /data/qa-8007/Prefix_3VBSED_slice_0011.dm3: [testng] [2025-03-25 01:09:10,219] [pool-1-thread-4] Initializing /data/jay/samples/APC2a-e3.tif: [testng] [2025-03-25 01:09:13,070] [pool-1-thread-3] Initializing /data/samples/test-tiles.dm3: [testng] [2025-03-25 01:09:14,295] [pool-1-thread-7] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.dm3: [testng] [2025-03-25 01:09:15,144] [pool-1-thread-8] Initializing /data/jay/samples/APC2a-e5.dm3: [testng] [2025-03-25 01:09:18,169] [pool-1-thread-2] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0016.dm4: [testng] [2025-03-25 01:09:18,660] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0011.dm4: [testng] [2025-03-25 01:09:19,131] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0010.dm4: [testng] [2025-03-25 01:09:19,646] [pool-1-thread-3] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0015.dm4: [testng] [2025-03-25 01:09:20,102] [pool-1-thread-12] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-1020x1020.tif: [testng] [2025-03-25 01:09:24,072] [pool-1-thread-10] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0008.dm4: [testng] [2025-03-25 01:09:28,006] [pool-1-thread-8] Initializing /data/jay/biosamplefullframe.dm3: [testng] [2025-03-25 01:09:29,438] [pool-1-thread-7] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2025-03-25 01:09:35,701] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0007.dm4: [testng] [2025-03-25 01:09:36,351] [pool-1-thread-2] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0000.dm4: [testng] [2025-03-25 01:09:36,978] [pool-1-thread-5] Initializing /data/public/imagesc-36590/SmallMontage0007.dm4: [testng] [2025-03-25 01:09:37,603] [pool-1-thread-3] Initializing /data/imagesc-3719/Heart_BSE_slice_0019.dm4: [testng] [2025-03-25 01:09:38,201] [pool-1-thread-10] Initializing /data/melissa/annotation-test.dm3: [testng] [2025-03-25 01:09:38,871] [pool-1-thread-1] Initializing /data/chip/Nanogold-1.dm3: [testng] [2025-03-25 01:09:39,521] [pool-1-thread-11] Initializing /data/qa-21647/Sample2_L1-0002.dm4: [testng] [2025-03-25 01:09:41,009] [pool-1-thread-8] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.dm3: [testng] [2025-03-25 01:09:41,646] [pool-1-thread-6] Initializing /data/public/imagesc-36590/SmallMontage0006.dm4: [testng] [2025-03-25 01:09:44,229] [pool-1-thread-4] Initializing /data/public/imagesc-36590/SmallMontage0002.dm4: [testng] [2025-03-25 01:09:45,652] [pool-1-thread-10] Initializing /data/qa-21761/example.dm4: [testng] [2025-03-25 01:09:46,231] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0012.dm4: [testng] [2025-03-25 01:09:47,283] [pool-1-thread-9] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2025-03-25 01:09:51,131] [pool-1-thread-11] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.dm4: [testng] [2025-03-25 01:09:51,662] [pool-1-thread-2] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0004.dm4: [testng] [2025-03-25 01:09:52,604] [pool-1-thread-3] Initializing /data/jayne/AM-2/MonGb3-S3.dm3: [testng] [2025-03-25 01:09:54,184] [pool-1-thread-6] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362-smaller.tif: [testng] [2025-03-25 01:09:58,343] [pool-1-thread-4] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0005.dm4: [testng] [2025-03-25 01:09:58,868] [pool-1-thread-1] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0019.dm4: [testng] [2025-03-25 01:09:59,411] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0018.dm4: [testng] [2025-03-25 01:10:00,037] [pool-1-thread-10] Initializing /data/jay/samples/APC2a-e4.dm3: [testng] [2025-03-25 01:10:00,717] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0017.dm4: [testng] [2025-03-25 01:10:01,439] [pool-1-thread-5] Initializing /data/jay/DMtest.dm3: [testng] [2025-03-25 01:10:03,808] [pool-1-thread-11] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2025-03-25 01:10:08,841] [pool-1-thread-2] Initializing /data/jayne/AM-2/MonGb3-S1.dm3: [testng] [2025-03-25 01:10:10,337] [pool-1-thread-3] Initializing /data/jay/DMtest2.dm3: [testng] [2025-03-25 01:10:11,056] [pool-1-thread-7] Initializing /data/qa-11392/Example_Gatan_File.dm4: [testng] [2025-03-25 01:10:11,750] [pool-1-thread-4] Initializing /data/jay/biosamplefullframetif.tif: [testng] [2025-03-25 01:10:18,014] [pool-1-thread-10] Initializing /data/jay/graphitedm3.dm3: [testng] [2025-03-25 01:10:18,763] [pool-1-thread-12] Initializing /data/public/imagesc-36590/SmallMontage0008.dm4: [testng] [2025-03-25 01:10:19,481] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0014.dm4: [testng] [2025-03-25 01:10:20,077] [pool-1-thread-1] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0050.dm4: [testng] [2025-03-25 01:10:20,700] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0001.dm4: [testng] [2025-03-25 01:10:25,051] [pool-1-thread-2] Initializing /data/public/EMPIAR/EMPIAR-10013/BGal_000438_frames.dm4: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 5194, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 3 minutes 40 seconds Finished: SUCCESS