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Started by upstream project "BIOFORMATS-test-repo" build number 390 originally caused by: Started by upstream project "Trigger" build number 414 originally caused by: Started by user devspace Restarted from build #413, stage Bio-Formats Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@12 [BIOFORMATS-test-folder@12] $ /bin/bash -xe /tmp/jenkins14584271225785907474.sh + '[' targa = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_61690_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:13:11,982 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 01:13:11,984 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service. [testng] 01:13:11,984 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:13:11,985 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:13:11,985 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:13:11,985 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:13:11,986 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:13:11,986 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:13:11,986 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:13:11,987 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:13:11,987 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:13:11,988 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:13:12,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:13:12,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:13:12,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:13:12,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:13:12,219 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:13:12,219 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:13:12,219 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:13:12,219 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:13:12,220 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration. [testng] 01:13:12,220 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point [testng] 01:13:12,220 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 234 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-25 01:13:12,231] [main] java.version = 11.0.16 [testng] 01:13:12,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:13:12,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:13:12,283 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-25_01-13-12.log] [testng] 01:13:12,285 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration. [testng] [2025-03-25 01:13:12,287] [main] testng.directory = /data [testng] [2025-03-25 01:13:12,287] [main] testng.configDirectory = /config [testng] [2025-03-25 01:13:12,299] [main] testng.multiplier = 1.0 [testng] [2025-03-25 01:13:12,301] [main] testng.in-memory = false [testng] [2025-03-25 01:13:12,301] [main] testng.allow-missing = false [testng] [2025-03-25 01:13:12,301] [main] user.language = en [testng] [2025-03-25 01:13:12,301] [main] user.country = ${user.country} [testng] [2025-03-25 01:13:12,301] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-25 01:13:12,853] [main] ---------------------------------------- [testng] [2025-03-25 01:13:12,853] [main] Total files: 21 [testng] [2025-03-25 01:13:12,853] [main] Scan time: 0.552 s (26 ms/file) [testng] [2025-03-25 01:13:12,853] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-25 01:13:37,156] [pool-1-thread-1] Initializing /data/samples/XING_B24.TGA: [testng] 01:13:37,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:13:37,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:13:37,160 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-25_01-13-37.log] [testng] 01:13:37,161 |-INFO in ch.qos.logback.core.sift.SiftProcessor@405840a5 - End of configuration. [testng] [2025-03-25 01:13:38,103] [pool-1-thread-12] Initializing /data/samples/XING_T24.TGA: [testng] 01:13:38,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:13:38,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:13:38,104 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-25_01-13-38.log] [testng] 01:13:38,105 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fb72601 - End of configuration. [testng] [2025-03-25 01:13:39,110] [pool-1-thread-11] Initializing /data/samples/XING_B32.TGA: [testng] 01:13:39,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:13:39,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:13:39,111 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-25_01-13-39.log] [testng] 01:13:39,111 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2345b5ff - End of configuration. [testng] [2025-03-25 01:13:40,064] [pool-1-thread-10] Initializing /data/samples/FLAG_B32.TGA: [testng] 01:13:40,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:13:40,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:13:40,065 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-25_01-13-40.log] [testng] 01:13:40,065 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41f8c284 - End of configuration. [testng] [2025-03-25 01:13:41,083] [pool-1-thread-9] Initializing /data/samples/FLAG_B16.TGA: [testng] 01:13:41,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:13:41,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:13:41,084 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-25_01-13-41.log] [testng] 01:13:41,084 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6db50563 - End of configuration. [testng] [2025-03-25 01:13:41,904] [pool-1-thread-8] Initializing /data/samples/UCM8.TGA: [testng] 01:13:41,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:13:41,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:13:41,905 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-25_01-13-41.log] [testng] 01:13:41,906 |-INFO in ch.qos.logback.core.sift.SiftProcessor@505c9456 - End of configuration. [testng] [2025-03-25 01:13:42,396] [pool-1-thread-7] Initializing /data/samples/XING_T32.TGA: [testng] 01:13:42,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:13:42,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:13:42,396 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-25_01-13-42.log] [testng] 01:13:42,397 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e4598f7 - End of configuration. [testng] [2025-03-25 01:13:43,215] [pool-1-thread-6] Initializing /data/samples/UTC16.TGA: [testng] 01:13:43,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:13:43,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:13:43,216 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-25_01-13-43.log] [testng] 01:13:43,217 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b2ce26d - End of configuration. [testng] [2025-03-25 01:13:44,081] [pool-1-thread-5] Initializing /data/samples/FLAG_T32.TGA: [testng] 01:13:44,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:13:44,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:13:44,082 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-25_01-13-44.log] [testng] 01:13:44,082 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45e623a8 - End of configuration. [testng] [2025-03-25 01:13:44,900] [pool-1-thread-4] Initializing /data/samples/CTC24.TGA: [testng] 01:13:44,900 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:13:44,900 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:13:44,901 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-25_01-13-44.log] [testng] 01:13:44,901 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46fc7e9f - End of configuration. [testng] [2025-03-25 01:13:45,706] [pool-1-thread-3] Initializing /data/samples/UTC32.TGA: [testng] 01:13:45,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:13:45,707 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:13:45,707 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-25_01-13-45.log] [testng] 01:13:45,708 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3129d52 - End of configuration. [testng] [2025-03-25 01:13:46,741] [pool-1-thread-2] Initializing /data/samples/UTC24.TGA: [testng] 01:13:46,741 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:13:46,741 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:13:46,742 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-25_01-13-46.log] [testng] 01:13:46,742 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e55dd70 - End of configuration. [testng] [2025-03-25 01:13:57,347] [pool-1-thread-8] Initializing /data/samples/FLAG_B24.TGA: [testng] [2025-03-25 01:13:58,238] [pool-1-thread-9] Initializing /data/samples/MARBLES.TGA: [testng] [2025-03-25 01:13:59,124] [pool-1-thread-10] Initializing /data/samples/XING_T16.TGA: [testng] [2025-03-25 01:13:59,985] [pool-1-thread-5] Initializing /data/samples/FLAG_T16.TGA: [testng] [2025-03-25 01:14:00,824] [pool-1-thread-4] Initializing /data/samples/UBW8.TGA: [testng] [2025-03-25 01:14:01,698] [pool-1-thread-1] Initializing /data/samples/CTC16.TGA: [testng] [2025-03-25 01:14:02,538] [pool-1-thread-12] Initializing /data/samples/CCM8.TGA: [testng] [2025-03-25 01:14:03,326] [pool-1-thread-11] Initializing /data/samples/CBW8.TGA: [testng] [2025-03-25 01:14:04,169] [pool-1-thread-7] Initializing /data/samples/XING_B16.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 3 seconds Finished: SUCCESS