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Started by upstream project "BIOFORMATS-test-repo" build number 390 originally caused by: Started by upstream project "Trigger" build number 414 originally caused by: Started by user devspace Restarted from build #413, stage Bio-Formats Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@17 [BIOFORMATS-test-folder@17] $ /bin/bash -xe /tmp/jenkins16529910280397366802.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_61694_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:16:01,789 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 01:16:01,791 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service. [testng] 01:16:01,791 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:16:01,792 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:16:01,793 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:16:01,793 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:16:01,794 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:16:01,794 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:16:01,794 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:16:01,795 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:16:01,796 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:16:01,796 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:16:01,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:16:01,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:16:02,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:16:02,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:16:02,025 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:16:02,025 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:16:02,025 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:16:02,026 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:16:02,026 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration. [testng] 01:16:02,027 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point [testng] 01:16:02,027 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 233 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-25 01:16:02,037] [main] java.version = 11.0.16 [testng] 01:16:02,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:16:02,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:16:02,097 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-25_01-16-02.log] [testng] 01:16:02,099 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration. [testng] [2025-03-25 01:16:02,101] [main] testng.directory = /data [testng] [2025-03-25 01:16:02,101] [main] testng.configDirectory = /config [testng] [2025-03-25 01:16:02,112] [main] testng.multiplier = 1.0 [testng] [2025-03-25 01:16:02,114] [main] testng.in-memory = false [testng] [2025-03-25 01:16:02,114] [main] testng.allow-missing = false [testng] [2025-03-25 01:16:02,114] [main] user.language = en [testng] [2025-03-25 01:16:02,114] [main] user.country = ${user.country} [testng] [2025-03-25 01:16:02,114] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-25 01:17:55,091] [main] ---------------------------------------- [testng] [2025-03-25 01:17:55,091] [main] Total files: 259 [testng] [2025-03-25 01:17:55,091] [main] Scan time: 112.977 s (436 ms/file) [testng] [2025-03-25 01:17:55,091] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-25 02:04:06,491] [pool-1-thread-1] Initializing /data/brian/MitoRed-POPO3.oib: [testng] 02:04:06,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:04:06,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:06,494 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-25_02-04-06.log] [testng] 02:04:06,494 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3dae4a2b - End of configuration. [testng] [2025-03-25 02:04:11,710] [pool-1-thread-12] Initializing /data/satoshi/60x_5x_1.oif: [testng] 02:04:11,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:04:11,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:11,711 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-25_02-04-11.log] [testng] 02:04:11,712 |-INFO in ch.qos.logback.core.sift.SiftProcessor@634ca764 - End of configuration. [testng] [2025-03-25 02:04:26,096] [pool-1-thread-11] Initializing /data/molly/11OCT5.OIF: [testng] 02:04:26,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:04:26,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:26,098 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-25_02-04-26.log] [testng] 02:04:26,098 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e14aec5 - End of configuration. [testng] [2025-03-25 02:06:09,350] [pool-1-thread-10] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] 02:06:09,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:06:09,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:09,351 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-25_02-06-09.log] [testng] 02:06:09,351 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39df5e62 - End of configuration. [testng] [2025-03-25 02:06:13,676] [pool-1-thread-9] Initializing /data/michael/CELL3.oib: [testng] 02:06:13,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:06:13,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:13,677 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-25_02-06-13.log] [testng] 02:06:13,677 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ec618fb - End of configuration. [testng] [2025-03-25 02:06:17,987] [pool-1-thread-8] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] 02:06:17,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:06:17,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:17,988 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-25_02-06-17.log] [testng] 02:06:17,988 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ae6db23 - End of configuration. [testng] [2025-03-25 02:06:23,020] [pool-1-thread-7] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] 02:06:23,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:06:23,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:23,021 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-25_02-06-23.log] [testng] 02:06:23,021 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9eec95 - End of configuration. [testng] [2025-03-25 02:06:28,346] [pool-1-thread-6] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] 02:06:28,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:06:28,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:28,347 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-25_02-06-28.log] [testng] 02:06:28,347 |-INFO in ch.qos.logback.core.sift.SiftProcessor@797a0384 - End of configuration. [testng] [2025-03-25 02:06:34,662] [pool-1-thread-5] Initializing /data/stefan/cytosol_08b.oif: [testng] 02:06:34,662 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:06:34,662 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:34,663 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-25_02-06-34.log] [testng] 02:06:34,663 |-INFO in ch.qos.logback.core.sift.SiftProcessor@908ba26 - End of configuration. [testng] [2025-03-25 02:07:26,342] [pool-1-thread-4] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] 02:07:26,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:07:26,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:26,342 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-25_02-07-26.log] [testng] 02:07:26,343 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f1632d3 - End of configuration. [testng] [2025-03-25 02:07:32,082] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] 02:07:32,082 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:07:32,082 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:32,083 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-25_02-07-32.log] [testng] 02:07:32,083 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c32b91 - End of configuration. [testng] [2025-03-25 02:07:37,196] [pool-1-thread-2] Initializing /data/christian/20min.oif: [testng] 02:07:37,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:07:37,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:37,197 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-25_02-07-37.log] [testng] 02:07:37,197 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e9e9a3d - End of configuration. [testng] [2025-03-25 02:08:13,429] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2025-03-25 02:08:18,617] [pool-1-thread-8] Initializing /data/johannes/step1.bmp: [testng] [2025-03-25 02:08:19,448] [pool-1-thread-6] Initializing /data/glen/singleseqline.oib: [testng] [2025-03-25 02:08:24,221] [pool-1-thread-7] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2025-03-25 02:08:29,193] [pool-1-thread-4] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2025-03-25 02:08:33,670] [pool-1-thread-3] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2025-03-25 02:08:39,130] [pool-1-thread-10] Initializing /data/jae/Image0001.oib: [testng] [2025-03-25 02:08:44,255] [pool-1-thread-1] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2025-03-25 02:09:01,222] [pool-1-thread-8] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2025-03-25 02:09:49,502] [pool-1-thread-6] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2025-03-25 02:09:54,844] [pool-1-thread-3] Initializing /data/brian/Kaede15.oib: [testng] [2025-03-25 02:10:00,044] [pool-1-thread-4] Initializing /data/simon/used_to_work.oib: [testng] [2025-03-25 02:10:04,916] [pool-1-thread-10] Initializing /data/brian/CFP-GFP2.oib: [testng] [2025-03-25 02:10:10,241] [pool-1-thread-7] Initializing /data/yoshihito/XY.oif: [testng] [2025-03-25 02:10:15,656] [pool-1-thread-1] Initializing /data/yoshihito/XY.oib: [testng] [2025-03-25 02:10:20,588] [pool-1-thread-9] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2025-03-25 02:11:07,676] [pool-1-thread-6] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2025-03-25 02:11:15,161] [pool-1-thread-2] Initializing /data/glen/111407.oif: [testng] [2025-03-25 02:11:43,869] [pool-1-thread-1] Initializing /data/sten/01.oib: [testng] [2025-03-25 02:11:48,633] [pool-1-thread-10] Initializing /data/chris/missegragation-15.oib: [testng] [2025-03-25 02:11:53,520] [pool-1-thread-3] Initializing /data/johannes/step5b.bmp: [testng] [2025-03-25 02:11:54,630] [pool-1-thread-4] Initializing /data/marc/V0606L.oib: [testng] [2025-03-25 02:12:16,497] [pool-1-thread-3] Initializing /data/molly/11OCT8.OIF: [testng] [2025-03-25 02:14:13,105] [pool-1-thread-10] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2025-03-25 02:14:24,310] [pool-1-thread-1] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] [2025-03-25 02:14:40,027] [pool-1-thread-4] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2025-03-25 02:15:12,736] [pool-1-thread-7] Initializing /data/johannes/step4.bmp: [testng] [2025-03-25 02:15:13,522] [pool-1-thread-4] Initializing /data/simon/never_worked.oib: [testng] [2025-03-25 02:15:26,729] [pool-1-thread-7] Initializing /data/monica/Image0056.oif: [testng] [2025-03-25 02:15:53,182] [pool-1-thread-4] Initializing /data/qa-17748/Image0079.oib: [testng] [2025-03-25 02:16:12,638] [pool-1-thread-6] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] [2025-03-25 02:16:50,205] [pool-1-thread-4] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2025-03-25 02:17:28,083] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2025-03-25 02:18:06,624] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2025-03-25 02:18:30,535] [pool-1-thread-9] Initializing /data/pedro/plv-test.oib: [testng] [2025-03-25 02:18:48,536] [pool-1-thread-4] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2025-03-25 02:19:00,115] [pool-1-thread-1] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2025-03-25 02:19:13,343] [pool-1-thread-9] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2025-03-25 02:19:29,280] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2025-03-25 02:19:43,753] [pool-1-thread-1] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2025-03-25 02:20:08,261] [pool-1-thread-9] Initializing /data/stefan/cytosol_03e.oib: [testng] [2025-03-25 02:20:26,388] [pool-1-thread-4] Initializing /data/david/Image0016.oib: [testng] [2025-03-25 02:20:50,031] [pool-1-thread-9] Initializing /data/johannes/Image0010/Image0010.oif: [testng] [2025-03-25 02:21:11,751] [pool-1-thread-4] Initializing /data/johannes/step2.bmp: [testng] [2025-03-25 02:21:27,322] [pool-1-thread-4] Initializing /data/molly/11OCT7.OIF: [testng] [2025-03-25 02:23:31,056] [pool-1-thread-7] Initializing /data/stefan/yc2_live-03.oib: [testng] [2025-03-25 02:24:11,505] [pool-1-thread-7] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2025-03-25 02:24:47,279] [pool-1-thread-7] Initializing /data/francesco/fGfp.c15.oib: [testng] [2025-03-25 02:25:19,120] [pool-1-thread-7] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2025-03-25 02:32:53,235] [pool-1-thread-12] Initializing /data/glen/Image0002.oif: [testng] [2025-03-25 02:33:20,526] [pool-1-thread-10] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2025-03-25 02:33:46,573] [pool-1-thread-10] Initializing /data/molly/11OCT3.OIF: [testng] [2025-03-25 02:39:04,224] [pool-1-thread-9] Initializing /data/molly/11OCT10.OIF: [testng] [2025-03-25 02:41:45,154] [pool-1-thread-1] Initializing /data/glen/Null file/test no change.oif: [testng] [2025-03-25 02:45:31,972] [pool-1-thread-1] Initializing /data/brian/PA-GFP-3.oib: [testng] [2025-03-25 02:46:05,699] [pool-1-thread-1] Initializing /data/glen/simulstack.oif: [testng] [2025-03-25 03:17:14,976] [pool-1-thread-7] Initializing /data/stefan/cytosol_01a.oif: [testng] [2025-03-25 03:27:31,432] [pool-1-thread-6] Initializing /data/johannes/step3.bmp: [testng] [2025-03-25 03:27:44,092] [pool-1-thread-6] Initializing /data/glen/seqlinestack.oif: [testng] 03:55:35,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:55:35,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:55:35,564 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-25_03-55-35.log] [testng] 03:55:35,564 |-INFO in ch.qos.logback.core.sift.SiftProcessor@549b9b9c - End of configuration. [testng] 03:56:22,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:56:22,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:56:22,495 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-25_03-56-22.log] [testng] 03:56:22,496 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c85edcc - End of configuration. [testng] [2025-03-25 03:57:52,344] [pool-1-thread-2] Initializing /data/aryeh/1h_after_pdt.oib: [testng] [2025-03-25 03:58:53,858] [pool-1-thread-2] Initializing /data/qa-17748/Image0098.oib: [testng] [2025-03-25 03:59:22,063] [pool-1-thread-2] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2025-03-25 03:59:53,993] [pool-1-thread-2] Initializing /data/allan/62909#1.oib: [testng] [2025-03-25 04:00:30,593] [pool-1-thread-2] Initializing /data/brian/FLIP.oib: [testng] [2025-03-25 04:01:14,954] [pool-1-thread-2] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2025-03-25 04:01:52,723] [pool-1-thread-2] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] 04:22:51,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:22:51,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:22:51,482 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-25_04-22-51.log] [testng] 04:22:51,482 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3631ee15 - End of configuration. [testng] [2025-03-25 04:32:49,687] [pool-1-thread-11] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2025-03-25 04:33:03,997] [pool-1-thread-11] Initializing /data/glen/LUT issue/60x11.oif: [testng] 04:36:43,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:36:43,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:36:43,971 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-25_04-36-43.log] [testng] 04:36:43,972 |-INFO in ch.qos.logback.core.sift.SiftProcessor@339e0b3c - End of configuration. [testng] [2025-03-25 04:56:58,251] [pool-1-thread-12] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] [2025-03-25 04:59:14,500] [pool-1-thread-4] Initializing /data/molly/11OCT6.OIF: [testng] [2025-03-25 05:09:21,509] [pool-1-thread-12] Initializing /data/molly/11OCT11.OIF: [testng] 05:13:05,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:13:05,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:13:05,128 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-25_05-13-05.log] [testng] 05:13:05,128 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ee9cc9e - End of configuration. [testng] [2025-03-25 05:22:56,043] [pool-1-thread-1] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2025-03-25 05:27:12,902] [pool-1-thread-1] Initializing /data/aryeh/030408 2 1.oib: [testng] [2025-03-25 05:30:16,192] [pool-1-thread-1] Initializing /data/marc/V0606J.oib: [testng] [2025-03-25 05:31:05,036] [pool-1-thread-8] Initializing /data/brian/CagedATP CaG7.oib: [testng] [2025-03-25 05:34:00,429] [pool-1-thread-1] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2025-03-25 05:34:44,529] [pool-1-thread-8] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2025-03-25 05:39:04,285] [pool-1-thread-1] Initializing /data/glen/singleseqframe.oif: [testng] [2025-03-25 05:41:54,447] [pool-1-thread-8] Initializing /data/johannes/step4b.bmp: [testng] [2025-03-25 05:42:50,163] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2025-03-25 05:44:09,546] [pool-1-thread-8] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] [2025-03-25 05:46:43,177] [pool-1-thread-3] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2025-03-25 05:47:31,956] [pool-1-thread-3] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2025-03-25 05:51:05,202] [pool-1-thread-1] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2025-03-25 05:51:52,682] [pool-1-thread-1] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2025-03-25 05:52:37,057] [pool-1-thread-8] Initializing /data/brian/Lambda10nm.oib: [testng] [2025-03-25 05:52:48,552] [pool-1-thread-1] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] [2025-03-25 05:53:29,876] [pool-1-thread-8] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2025-03-25 05:53:52,186] [pool-1-thread-1] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] [2025-03-25 05:54:36,906] [pool-1-thread-8] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2025-03-25 05:55:35,321] [pool-1-thread-8] Initializing /data/molly/11OCT2.OIF: [testng] [2025-03-25 06:04:08,097] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2025-03-25 06:04:52,376] [pool-1-thread-1] Initializing /data/glen/Null file/test change.oif: [testng] 06:09:00,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 06:09:00,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:09:00,367 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-25_06-09-00.log] [testng] 06:09:00,367 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ed79ca7 - End of configuration. [testng] [2025-03-25 06:09:58,334] [pool-1-thread-5] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2025-03-25 06:10:44,283] [pool-1-thread-5] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2025-03-25 06:11:24,941] [pool-1-thread-1] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2025-03-25 06:11:46,351] [pool-1-thread-5] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2025-03-25 06:13:52,191] [pool-1-thread-1] Initializing /data/glen/singlesimul.oif: [testng] [2025-03-25 06:24:08,843] [pool-1-thread-1] Initializing /data/tom/RGB-1.avi: [testng] [2025-03-25 06:24:45,693] [pool-1-thread-1] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2025-03-25 06:25:45,690] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] [2025-03-25 06:27:00,292] [pool-1-thread-1] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] [2025-03-25 06:28:06,284] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2025-03-25 06:29:09,600] [pool-1-thread-1] Initializing /data/glen/notsaturated.oib: [testng] [2025-03-25 06:30:21,818] [pool-1-thread-1] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2025-03-25 06:30:52,951] [pool-1-thread-1] Initializing /data/david/Image0016.oif: [testng] [2025-03-25 07:06:46,403] [pool-1-thread-1] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2025-03-25 07:09:31,967] [pool-1-thread-1] Initializing /data/yasunori/series_1.oib: [testng] [2025-03-25 07:12:13,586] [pool-1-thread-1] Initializing /data/glen/4205basal106072.oif: [testng] 09:33:11,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 09:33:11,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:33:11,192 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-25_09-33-11.log] [testng] 09:33:11,193 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c8bd1ff - End of configuration. [testng] [2025-03-25 11:40:25,633] [pool-1-thread-2] Initializing /data/glen/singlesimul.oib: [testng] [2025-03-25 11:47:10,952] [pool-1-thread-2] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2025-03-25 11:54:02,413] [pool-1-thread-2] Initializing /data/kay/IM2pg.oib: [testng] [2025-03-25 12:01:09,888] [pool-1-thread-2] Initializing /data/tom/zseries-test.oib: [testng] [2025-03-25 12:10:15,725] [pool-1-thread-2] Initializing /data/aryeh/1h.oib: [testng] [2025-03-25 12:18:34,869] [pool-1-thread-2] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2025-03-25 12:25:25,207] [pool-1-thread-2] Initializing /data/glen/simulstack.oib: [testng] [2025-03-25 12:32:31,387] [pool-1-thread-2] Initializing /data/brian/LILY POLLEN.oib: [testng] 12:35:55,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 12:35:55,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:35:55,785 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-25_12-35-55.log] [testng] 12:35:55,786 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44ab8f6a - End of configuration. [testng] [2025-03-25 12:39:50,989] [pool-1-thread-2] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2025-03-25 12:47:06,021] [pool-1-thread-2] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2025-03-25 12:55:03,828] [pool-1-thread-2] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2025-03-25 13:04:37,928] [pool-1-thread-2] Initializing /data/glen/singleseqframe.oib: [testng] [2025-03-25 13:13:23,674] [pool-1-thread-2] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2025-03-25 14:21:17,899] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2025-03-25 14:29:11,969] [pool-1-thread-3] Initializing /data/glen/seqlinestack.oib: [testng] [2025-03-25 14:39:20,148] [pool-1-thread-3] Initializing /data/aryeh/BP3 3h ch2.oif: Build was aborted Calling Pipeline was cancelled Finished: ABORTED