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Started by upstream project "BIOFORMATS-test-repo" build number 390 originally caused by: Started by upstream project "Trigger" build number 414 originally caused by: Started by user devspace Restarted from build #413, stage Bio-Formats Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@20 [BIOFORMATS-test-folder@20] $ /bin/bash -xe /tmp/jenkins7452957297895108799.sh + '[' apng = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_61779_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 07:15:15,471 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 07:15:15,473 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service. [testng] 07:15:15,473 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:15:15,474 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:15:15,475 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 07:15:15,475 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 07:15:15,475 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 07:15:15,475 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:15:15,476 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:15:15,476 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 07:15:15,477 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 07:15:15,477 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 07:15:15,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 07:15:15,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 07:15:15,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 07:15:15,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 07:15:15,703 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 07:15:15,703 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 07:15:15,703 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 07:15:15,704 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 07:15:15,704 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration. [testng] 07:15:15,705 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point [testng] 07:15:15,705 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 229 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-25 07:15:15,718] [main] java.version = 11.0.16 [testng] 07:15:15,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:15:15,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:15:15,770 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-25_07-15-15.log] [testng] 07:15:15,771 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration. [testng] [2025-03-25 07:15:15,773] [main] testng.directory = /data [testng] [2025-03-25 07:15:15,774] [main] testng.configDirectory = /config [testng] [2025-03-25 07:15:15,783] [main] testng.multiplier = 1.0 [testng] [2025-03-25 07:15:15,784] [main] testng.in-memory = false [testng] [2025-03-25 07:15:15,785] [main] testng.allow-missing = false [testng] [2025-03-25 07:15:15,785] [main] user.language = en [testng] [2025-03-25 07:15:15,785] [main] user.country = ${user.country} [testng] [2025-03-25 07:15:15,785] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-25 07:15:16,489] [main] ---------------------------------------- [testng] [2025-03-25 07:15:16,489] [main] Total files: 21 [testng] [2025-03-25 07:15:16,489] [main] Scan time: 0.704 s (33 ms/file) [testng] [2025-03-25 07:15:16,489] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-25 07:18:06,199] [pool-1-thread-1] Initializing /data/samples/william_wong05.png: [testng] 07:18:06,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 07:18:06,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:18:06,201 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-25_07-18-06.log] [testng] 07:18:06,202 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5dccb68f - End of configuration. [testng] [2025-03-25 07:18:09,271] [pool-1-thread-12] Initializing /data/samples/orbit.png: [testng] 07:18:09,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 07:18:09,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:18:09,273 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-25_07-18-09.log] [testng] 07:18:09,273 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5554e0d0 - End of configuration. [testng] [2025-03-25 07:18:12,265] [pool-1-thread-11] Initializing /data/samples/monkey_apng.png: [testng] 07:18:12,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 07:18:12,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:18:12,266 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-25_07-18-12.log] [testng] 07:18:12,267 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1149438 - End of configuration. [testng] [2025-03-25 07:18:13,177] [pool-1-thread-10] Initializing /data/samples/william_wong01.png: [testng] 07:18:13,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 07:18:13,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:18:13,178 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-25_07-18-13.log] [testng] 07:18:13,179 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f6cd913 - End of configuration. [testng] [2025-03-25 07:18:13,709] [pool-1-thread-9] Initializing /data/samples/StarV838.png: [testng] 07:18:13,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 07:18:13,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:18:13,710 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-25_07-18-13.log] [testng] 07:18:13,711 |-INFO in ch.qos.logback.core.sift.SiftProcessor@758ead1 - End of configuration. [testng] [2025-03-25 07:18:14,465] [pool-1-thread-8] Initializing /data/samples/daniel_coltri_two.png: [testng] 07:18:14,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 07:18:14,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:18:14,465 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-25_07-18-14.log] [testng] 07:18:14,466 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cd4341f - End of configuration. [testng] [2025-03-25 07:18:16,426] [pool-1-thread-7] Initializing /data/samples/PhugAnimation3.png: [testng] 07:18:16,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 07:18:16,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:18:16,427 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-25_07-18-16.log] [testng] 07:18:16,427 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f94794b - End of configuration. [testng] [2025-03-25 07:18:19,219] [pool-1-thread-6] Initializing /data/samples/MoonPhases.png: [testng] 07:18:19,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 07:18:19,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:18:19,220 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-25_07-18-19.log] [testng] 07:18:19,220 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62587209 - End of configuration. [testng] [2025-03-25 07:18:21,736] [pool-1-thread-5] Initializing /data/samples/daniel_coltri_one.png: [testng] 07:18:21,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 07:18:21,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:18:21,736 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-25_07-18-21.log] [testng] 07:18:21,737 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69f8b103 - End of configuration. [testng] [2025-03-25 07:18:24,840] [pool-1-thread-4] Initializing /data/samples/atom.png: [testng] 07:18:24,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 07:18:24,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:18:24,840 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-25_07-18-24.log] [testng] 07:18:24,841 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25cba300 - End of configuration. [testng] [2025-03-25 07:18:27,941] [pool-1-thread-3] Initializing /data/samples/phug_logo.png: [testng] 07:18:27,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 07:18:27,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:18:27,942 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-25_07-18-27.log] [testng] 07:18:27,942 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fe1aae3 - End of configuration. [testng] [2025-03-25 07:18:30,713] [pool-1-thread-2] Initializing /data/samples/Matrix.png: [testng] 07:18:30,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 07:18:30,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:18:30,714 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-25_07-18-30.log] [testng] 07:18:30,714 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d61a2a1 - End of configuration. [testng] [2025-03-25 07:20:18,520] [pool-1-thread-8] Initializing /data/colin/test.sfstdge.png: [testng] [2025-03-25 07:20:22,563] [pool-1-thread-1] Initializing /data/samples/joanna_viera01.png: [testng] [2025-03-25 07:20:27,023] [pool-1-thread-3] Initializing /data/samples/Sun.png: [testng] [2025-03-25 07:20:30,920] [pool-1-thread-4] Initializing /data/samples/william_wong04.png: [testng] [2025-03-25 07:20:35,329] [pool-1-thread-12] Initializing /data/samples/william_wong02.png: [testng] [2025-03-25 07:20:39,236] [pool-1-thread-2] Initializing /data/samples/spinfox.png: [testng] [2025-03-25 07:20:42,835] [pool-1-thread-5] Initializing /data/qa-7473/n.tif: [testng] [2025-03-25 07:22:43,784] [pool-1-thread-10] Initializing /data/qa-7473/x.png: [testng] [2025-03-25 07:22:44,551] [pool-1-thread-7] Initializing /data/samples/chompy2.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 19 minutes 44 seconds Finished: SUCCESS