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Started by upstream project "BIOFORMATS-test-repo" build number 390 originally caused by: Started by upstream project "Trigger" build number 414 originally caused by: Started by user devspace Restarted from build #413, stage Bio-Formats Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@16 [BIOFORMATS-test-folder@16] $ /bin/bash -xe /tmp/jenkins5256930695746197251.sh + '[' psd = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_61785_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 11:00:25,754 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 11:00:25,756 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service. [testng] 11:00:25,756 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:00:25,756 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:00:25,757 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 11:00:25,757 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 11:00:25,758 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 11:00:25,758 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:00:25,758 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:00:25,759 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 11:00:25,759 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 11:00:25,759 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 11:00:25,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 11:00:25,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 11:00:25,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 11:00:25,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 11:00:25,953 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 11:00:25,953 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 11:00:25,953 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 11:00:25,953 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 11:00:25,953 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration. [testng] 11:00:25,954 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point [testng] 11:00:25,954 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 196 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-25 11:00:25,963] [main] java.version = 11.0.16 [testng] 11:00:25,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 11:00:25,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:00:26,007 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-25_11-00-25.log] [testng] 11:00:26,008 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration. [testng] [2025-03-25 11:00:26,010] [main] testng.directory = /data [testng] [2025-03-25 11:00:26,010] [main] testng.configDirectory = /config [testng] [2025-03-25 11:00:26,020] [main] testng.multiplier = 1.0 [testng] [2025-03-25 11:00:26,021] [main] testng.in-memory = false [testng] [2025-03-25 11:00:26,022] [main] testng.allow-missing = false [testng] [2025-03-25 11:00:26,022] [main] user.language = en [testng] [2025-03-25 11:00:26,022] [main] user.country = ${user.country} [testng] [2025-03-25 11:00:26,022] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-25 11:00:27,860] [main] ---------------------------------------- [testng] [2025-03-25 11:00:27,860] [main] Total files: 18 [testng] [2025-03-25 11:00:27,860] [main] Scan time: 1.838 s (102 ms/file) [testng] [2025-03-25 11:00:27,860] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-25 11:12:20,927] [pool-1-thread-1] Initializing /data/misc/venus_composite.psd: [testng] 11:12:20,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 11:12:20,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:12:20,930 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-25_11-12-20.log] [testng] 11:12:20,930 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77e0139b - End of configuration. [testng] [2025-03-25 11:12:58,382] [pool-1-thread-12] Initializing /data/misc/smilie.psd: [testng] 11:12:58,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 11:12:58,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:12:58,384 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-25_11-12-58.log] [testng] 11:12:58,384 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15196867 - End of configuration. [testng] [2025-03-25 11:13:37,613] [pool-1-thread-11] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] 11:13:37,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 11:13:37,614 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:13:37,614 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-25_11-13-37.log] [testng] 11:13:37,615 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73854c0f - End of configuration. [testng] [2025-03-25 11:14:20,123] [pool-1-thread-10] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] 11:14:20,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 11:14:20,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:14:20,125 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-25_11-14-20.log] [testng] 11:14:20,125 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d2dcfbb - End of configuration. [testng] [2025-03-25 11:15:13,920] [pool-1-thread-9] Initializing /data/ascb/thin&thick fill.2.psd: [testng] 11:15:13,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 11:15:13,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:15:13,920 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-25_11-15-13.log] [testng] 11:15:13,921 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20d52f93 - End of configuration. [testng] [2025-03-25 11:16:02,334] [pool-1-thread-8] Initializing /data/misc/vig_drawing_1.psd: [testng] 11:16:02,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 11:16:02,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:16:02,335 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-25_11-16-02.log] [testng] 11:16:02,335 |-INFO in ch.qos.logback.core.sift.SiftProcessor@188a9798 - End of configuration. [testng] [2025-03-25 11:16:44,552] [pool-1-thread-7] Initializing /data/misc/venus_composite_8bit.psd: [testng] 11:16:44,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 11:16:44,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:16:44,553 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-25_11-16-44.log] [testng] 11:16:44,554 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15d2017 - End of configuration. [testng] [2025-03-25 11:17:28,504] [pool-1-thread-6] Initializing /data/cris/house.tif: [testng] 11:17:28,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 11:17:28,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:17:28,505 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-25_11-17-28.log] [testng] 11:17:28,506 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5262b3ca - End of configuration. [testng] [2025-03-25 11:19:51,133] [pool-1-thread-5] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] 11:19:51,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 11:19:51,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:19:51,134 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-25_11-19-51.log] [testng] 11:19:51,134 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3723c2b4 - End of configuration. [testng] [2025-03-25 11:20:46,295] [pool-1-thread-4] Initializing /data/ascb/607x.psd: [testng] 11:20:46,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 11:20:46,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:20:46,296 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-25_11-20-46.log] [testng] 11:20:46,296 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3265e8c6 - End of configuration. [testng] [2025-03-25 11:21:33,882] [pool-1-thread-3] Initializing /data/ascb/423.psd: [testng] 11:21:33,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 11:21:33,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:21:33,883 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-25_11-21-33.log] [testng] 11:21:33,883 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3728b78e - End of configuration. [testng] [2025-03-25 11:22:22,708] [pool-1-thread-2] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] 11:22:22,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 11:22:22,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:22:22,709 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-25_11-22-22.log] [testng] 11:22:22,710 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22c68232 - End of configuration. [testng] [2025-03-25 11:29:07,375] [pool-1-thread-12] Initializing /data/big-images/8kx8k.psd: [testng] [2025-03-25 11:29:50,814] [pool-1-thread-9] Initializing /data/misc/glossy_buttons.psd: [testng] [2025-03-25 11:30:26,067] [pool-1-thread-7] Initializing /data/qa-4117/caspase gel-1.psd: [testng] [2025-03-25 11:31:06,575] [pool-1-thread-1] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] [2025-03-25 11:31:52,532] [pool-1-thread-8] Initializing /data/simon/colour_separated_image.psd: [testng] [2025-03-25 11:32:32,521] [pool-1-thread-5] Initializing /data/misc/glossy_orbs.psd: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 39 minutes 8 seconds Finished: SUCCESS