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Started by upstream project "BIOFORMATS-test-repo" build number 391 originally caused by: Started by upstream project "Trigger" build number 415 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@15 [BIOFORMATS-test-folder@15] $ /bin/bash -xe /tmp/jenkins6655280948905114898.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_61806_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:31:54,876 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:31:54,877 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 00:31:54,877 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:31:54,878 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:31:54,878 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:31:54,879 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:31:54,879 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:31:54,879 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:31:54,879 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:31:54,880 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:31:54,880 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:31:54,880 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:31:55,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:31:55,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:31:55,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:31:55,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:31:55,057 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:31:55,058 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:31:55,058 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:31:55,058 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:31:55,058 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 00:31:55,059 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 00:31:55,059 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 180 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-26 00:31:55,067] [main] java.version = 17.0.2 [testng] 00:31:55,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:31:55,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:55,107 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-26_00-31-55.log] [testng] 00:31:55,108 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-03-26 00:31:55,110] [main] testng.directory = /data [testng] [2025-03-26 00:31:55,110] [main] testng.configDirectory = /config [testng] [2025-03-26 00:31:55,118] [main] testng.multiplier = 1.0 [testng] [2025-03-26 00:31:55,119] [main] testng.in-memory = false [testng] [2025-03-26 00:31:55,119] [main] testng.allow-missing = false [testng] [2025-03-26 00:31:55,119] [main] user.language = en [testng] [2025-03-26 00:31:55,119] [main] user.country = ${user.country} [testng] [2025-03-26 00:31:55,119] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-26 00:54:12,940] [main] ---------------------------------------- [testng] [2025-03-26 00:54:12,941] [main] Total files: 21 [testng] [2025-03-26 00:54:12,941] [main] Scan time: 1337.821 s (63705 ms/file) [testng] [2025-03-26 00:54:12,941] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-26 01:40:56,027] [pool-1-thread-1] Initializing /data/stefan/001_q06.txt: [testng] 01:40:56,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:40:56,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:56,029 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-26_01-40-56.log] [testng] 01:40:56,029 |-INFO in ch.qos.logback.core.sift.SiftProcessor@231b2407 - End of configuration. [testng] [2025-03-26 01:44:28,631] [pool-1-thread-12] Initializing /data/stefan/001_q07.txt: [testng] 01:44:28,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:44:28,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:28,632 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-26_01-44-28.log] [testng] 01:44:28,632 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47afb077 - End of configuration. [testng] [2025-03-26 01:50:45,983] [pool-1-thread-11] Initializing /data/stefan/001_q18.txt: [testng] 01:50:45,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:50:45,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:50:45,984 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-26_01-50-45.log] [testng] 01:50:45,984 |-INFO in ch.qos.logback.core.sift.SiftProcessor@612a7b30 - End of configuration. [testng] [2025-03-26 01:55:31,983] [pool-1-thread-10] Initializing /data/stefan/001_q09.txt: [testng] 01:55:31,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:55:31,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:31,984 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-26_01-55-31.log] [testng] 01:55:31,984 |-INFO in ch.qos.logback.core.sift.SiftProcessor@119dec0f - End of configuration. [testng] [2025-03-26 02:00:44,875] [pool-1-thread-9] Initializing /data/stefan/001_q08.txt: [testng] 02:00:44,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:00:44,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:44,876 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-26_02-00-44.log] [testng] 02:00:44,877 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21a98e7a - End of configuration. [testng] [2025-03-26 02:04:45,554] [pool-1-thread-8] Initializing /data/stefan/001_q02.txt: [testng] 02:04:45,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:04:45,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:45,555 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-26_02-04-45.log] [testng] 02:04:45,555 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23534ac1 - End of configuration. [testng] [2025-03-26 02:07:54,115] [pool-1-thread-7] Initializing /data/stefan/001_q01.txt: [testng] 02:07:54,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:07:54,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:54,116 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-26_02-07-54.log] [testng] 02:07:54,117 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67e3014 - End of configuration. [testng] [2025-03-26 02:10:45,921] [pool-1-thread-6] Initializing /data/stefan/001_q17.txt: [testng] 02:10:45,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:10:45,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:10:45,922 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-26_02-10-45.log] [testng] 02:10:45,922 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a9cc317 - End of configuration. [testng] [2025-03-26 02:13:13,881] [pool-1-thread-5] Initializing /data/stefan/001_q14.txt: [testng] 02:13:13,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:13:13,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:13:13,882 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-26_02-13-13.log] [testng] 02:13:13,882 |-INFO in ch.qos.logback.core.sift.SiftProcessor@125e4dd7 - End of configuration. [testng] [2025-03-26 02:15:43,383] [pool-1-thread-4] Initializing /data/stefan/001_q03.txt: [testng] 02:15:43,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:15:43,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:15:43,384 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-26_02-15-43.log] [testng] 02:15:43,384 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68d9eee1 - End of configuration. [testng] [2025-03-26 02:18:46,484] [pool-1-thread-3] Initializing /data/stefan/001_q05.txt: [testng] 02:18:46,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:18:46,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:46,484 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-26_02-18-46.log] [testng] 02:18:46,485 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ebe67b5 - End of configuration. [testng] [2025-03-26 02:22:44,038] [pool-1-thread-2] Initializing /data/stefan/001_q12.txt: [testng] 02:22:44,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:22:44,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:44,039 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-26_02-22-44.log] [testng] 02:22:44,039 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c8651c1 - End of configuration. [testng] [2025-03-26 03:06:14,689] [pool-1-thread-7] Initializing /data/stefan/001_q13.txt: [testng] [2025-03-26 03:11:43,469] [pool-1-thread-8] Initializing /data/stefan/001_q16.txt: [testng] [2025-03-26 03:16:34,437] [pool-1-thread-4] Initializing /data/stefan/001_q15.txt: [testng] [2025-03-26 03:21:07,312] [pool-1-thread-1] Initializing /data/stefan/001_q10.txt: [testng] [2025-03-26 03:25:34,938] [pool-1-thread-6] Initializing /data/stefan/001_q11.txt: [testng] [2025-03-26 03:28:31,128] [pool-1-thread-11] Initializing /data/stefan/001_q04.txt: [testng] 04:14:38,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:14:38,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:38,962 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-26_04-14-38.log] [testng] 04:14:38,962 |-INFO in ch.qos.logback.core.sift.SiftProcessor@403c3a01 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 222 minutes 46 seconds Finished: SUCCESS