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Started by upstream project "BIOFORMATS-test-repo" build number 391 originally caused by: Started by upstream project "Trigger" build number 415 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins2653221826800099671.sh + '[' bmp = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_61815_merge_ci -v /uod/idr/repos/curated/bmp:/data -v /uod/idr-scratch/merge-ci/curated/bmp:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:44:35,280 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:44:35,282 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 00:44:35,282 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:44:35,283 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:44:35,283 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:44:35,283 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:44:35,284 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:44:35,284 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:44:35,284 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:44:35,285 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:44:35,285 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:44:35,285 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:44:35,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:44:35,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:44:35,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:44:35,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:44:35,464 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:44:35,464 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:44:35,464 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:44:35,464 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:44:35,464 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 00:44:35,465 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 00:44:35,465 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 181 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-26 00:44:35,473] [main] java.version = 17.0.2 [testng] 00:44:35,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:44:35,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:35,514 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-26_00-44-35.log] [testng] 00:44:35,515 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-03-26 00:44:35,517] [main] testng.directory = /data [testng] [2025-03-26 00:44:35,518] [main] testng.configDirectory = /config [testng] [2025-03-26 00:44:35,529] [main] testng.multiplier = 1.0 [testng] [2025-03-26 00:44:35,530] [main] testng.in-memory = false [testng] [2025-03-26 00:44:35,530] [main] testng.allow-missing = false [testng] [2025-03-26 00:44:35,530] [main] user.language = en [testng] [2025-03-26 00:44:35,530] [main] user.country = ${user.country} [testng] [2025-03-26 00:44:35,530] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-26 00:44:40,348] [main] ---------------------------------------- [testng] [2025-03-26 00:44:40,348] [main] Total files: 31 [testng] [2025-03-26 00:44:40,348] [main] Scan time: 4.818 s (155 ms/file) [testng] [2025-03-26 00:44:40,348] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 31 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-26 00:49:23,271] [pool-1-thread-1] Initializing /data/big-images/8kx8k-grey.bmp: [testng] 00:49:23,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:49:23,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:23,273 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-26_00-49-23.log] [testng] 00:49:23,273 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a2afd27 - End of configuration. [testng] [2025-03-26 00:49:29,083] [pool-1-thread-12] Initializing /data/brian/images/kidney_TFl_1.bmp: [testng] 00:49:29,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:49:29,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:29,084 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-26_00-49-29.log] [testng] 00:49:29,084 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ba0e9b - End of configuration. [testng] [2025-03-26 00:49:35,772] [pool-1-thread-11] Initializing /data/frank/cell_mask_error.bmp: [testng] 00:49:35,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:49:35,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:35,773 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-26_00-49-35.log] [testng] 00:49:35,774 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7dcf733 - End of configuration. [testng] [2025-03-26 00:49:41,376] [pool-1-thread-10] Initializing /data/dennis/kidney_TFl_One.bmp: [testng] 00:49:41,376 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:49:41,376 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:41,377 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-26_00-49-41.log] [testng] 00:49:41,377 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c8e583d - End of configuration. [testng] [2025-03-26 00:49:43,288] [pool-1-thread-9] Initializing /data/ticket-12971/foo.bmp: [testng] 00:49:43,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:49:43,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:43,289 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-26_00-49-43.log] [testng] 00:49:43,289 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53a5e330 - End of configuration. [testng] [2025-03-26 00:49:44,242] [pool-1-thread-8] Initializing /data/brian/images/DMSOHigh_001.bmp: [testng] 00:49:44,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:49:44,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:44,243 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-26_00-49-44.log] [testng] 00:49:44,244 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a20652f - End of configuration. [testng] [2025-03-26 00:49:45,259] [pool-1-thread-7] Initializing /data/big-images/8kx8k.bmp: [testng] 00:49:45,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:49:45,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:45,260 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-26_00-49-45.log] [testng] 00:49:45,260 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c47c972 - End of configuration. [testng] [2025-03-26 00:49:46,471] [pool-1-thread-6] Initializing /data/dennis/kidney_TFl_Three.bmp: [testng] 00:49:46,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:49:46,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:46,472 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-26_00-49-46.log] [testng] 00:49:46,473 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cfb8516 - End of configuration. [testng] [2025-03-26 00:49:51,005] [pool-1-thread-5] Initializing /data/dennis/kidney_TFl_Seven.bmp: [testng] 00:49:51,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:49:51,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:51,006 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-26_00-49-51.log] [testng] 00:49:51,007 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63183898 - End of configuration. [testng] [2025-03-26 00:49:57,320] [pool-1-thread-4] Initializing /data/brian/images/raw_a.bmp: [testng] 00:49:57,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:49:57,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:57,321 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-26_00-49-57.log] [testng] 00:49:57,321 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f394089 - End of configuration. [testng] [2025-03-26 00:50:03,439] [pool-1-thread-3] Initializing /data/dennis/kidney_TFl_Four.bmp: [testng] 00:50:03,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:50:03,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:03,440 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-26_00-50-03.log] [testng] 00:50:03,441 |-INFO in ch.qos.logback.core.sift.SiftProcessor@431ce2ed - End of configuration. [testng] [2025-03-26 00:50:10,244] [pool-1-thread-2] Initializing /data/curtis/image5.bmp: [testng] 00:50:10,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:50:10,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:10,245 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-26_00-50-10.log] [testng] 00:50:10,246 |-INFO in ch.qos.logback.core.sift.SiftProcessor@735b60d1 - End of configuration. [testng] [2025-03-26 00:51:44,641] [pool-1-thread-9] Initializing /data/dennis/kidney_TFl_Two.bmp: [testng] [2025-03-26 00:51:48,145] [pool-1-thread-5] Initializing /data/dennis/kidney_TFl_Six.bmp: [testng] [2025-03-26 00:51:53,800] [pool-1-thread-12] Initializing /data/bk/100427RBTLPC_FD3__A___5_T_001_ch_00_image_00025_Z_001.bmp: [testng] [2025-03-26 00:51:57,893] [pool-1-thread-11] Initializing /data/curtis/image3.bmp: [testng] [2025-03-26 00:52:02,004] [pool-1-thread-4] Initializing /data/brian/images/kidney_TFl_1_greyscale.bmp: [testng] [2025-03-26 00:52:05,293] [pool-1-thread-2] Initializing /data/brian/images/23srp5dksub.bmp: [testng] [2025-03-26 00:52:08,524] [pool-1-thread-10] Initializing /data/qa-4538/22577136_Figure 2_A_ATF6 (GST)_13572.bmp: [testng] [2025-03-26 00:52:11,920] [pool-1-thread-8] Initializing /data/brian/images/raw_a_rg.bmp: [testng] [2025-03-26 00:52:15,318] [pool-1-thread-3] Initializing /data/stephane/holo0908.bmp: [testng] [2025-03-26 00:52:20,460] [pool-1-thread-6] Initializing /data/brian/images/raw_a_rg.tiff: [testng] [2025-03-26 00:52:56,854] [pool-1-thread-1] Initializing /data/big-images/6kx6k-grey.bmp: [testng] [2025-03-26 00:53:06,288] [pool-1-thread-7] Initializing /data/curtis/image1.bmp: [testng] [2025-03-26 00:54:01,528] [pool-1-thread-8] Initializing /data/big-images/6kx6k.bmp: [testng] [2025-03-26 00:54:07,257] [pool-1-thread-11] Initializing /data/curtis/image4.bmp: [testng] [2025-03-26 00:54:12,220] [pool-1-thread-10] Initializing /data/dennis/kidney_TFl_Five.bmp: [testng] [2025-03-26 00:54:12,950] [pool-1-thread-5] Initializing /data/dennis/kidney_TFl_Eight.bmp: [testng] [2025-03-26 00:54:17,519] [pool-1-thread-2] Initializing /data/bk/ch_00.bmp: [testng] [2025-03-26 00:54:21,006] [pool-1-thread-3] Initializing /data/curtis/image2.bmp: [testng] [2025-03-26 00:54:24,127] [pool-1-thread-4] Initializing /data/dennis/kidney_TFl_Nine.bmp: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1643, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 13 minutes 0 seconds Finished: SUCCESS