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Started by upstream project "BIOFORMATS-test-repo" build number 391 originally caused by: Started by upstream project "Trigger" build number 415 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@14 [BIOFORMATS-test-folder@14] $ /bin/bash -xe /tmp/jenkins2462183028934967896.sh + '[' targa = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_61828_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:25:29,964 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 02:25:29,965 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 02:25:29,965 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:25:29,966 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:25:29,967 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:25:29,967 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:25:29,967 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:25:29,967 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:25:29,968 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:25:29,968 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:25:29,968 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:25:29,969 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:25:30,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:25:30,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:25:30,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:25:30,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:25:30,155 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:25:30,155 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:25:30,156 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:25:30,156 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:25:30,156 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 02:25:30,157 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 02:25:30,157 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 189 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-26 02:25:30,166] [main] java.version = 17.0.2 [testng] 02:25:30,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:25:30,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:30,209 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-26_02-25-30.log] [testng] 02:25:30,210 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-03-26 02:25:30,213] [main] testng.directory = /data [testng] [2025-03-26 02:25:30,213] [main] testng.configDirectory = /config [testng] [2025-03-26 02:25:30,221] [main] testng.multiplier = 1.0 [testng] [2025-03-26 02:25:30,222] [main] testng.in-memory = false [testng] [2025-03-26 02:25:30,222] [main] testng.allow-missing = false [testng] [2025-03-26 02:25:30,222] [main] user.language = en [testng] [2025-03-26 02:25:30,222] [main] user.country = ${user.country} [testng] [2025-03-26 02:25:30,222] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-26 02:25:32,167] [main] ---------------------------------------- [testng] [2025-03-26 02:25:32,167] [main] Total files: 21 [testng] [2025-03-26 02:25:32,167] [main] Scan time: 1.945 s (92 ms/file) [testng] [2025-03-26 02:25:32,167] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-26 02:45:13,918] [pool-1-thread-1] Initializing /data/samples/UCM8.TGA: [testng] 02:45:13,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:45:13,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:13,920 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-26_02-45-13.log] [testng] 02:45:13,921 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46df9eb2 - End of configuration. [testng] [2025-03-26 02:46:02,260] [pool-1-thread-12] Initializing /data/samples/UBW8.TGA: [testng] 02:46:02,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:46:02,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:02,262 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-26_02-46-02.log] [testng] 02:46:02,262 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c320cb1 - End of configuration. [testng] [2025-03-26 02:46:44,422] [pool-1-thread-11] Initializing /data/samples/CTC24.TGA: [testng] 02:46:44,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:46:44,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:44,423 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-26_02-46-44.log] [testng] 02:46:44,423 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ca15dbf - End of configuration. [testng] [2025-03-26 02:47:40,237] [pool-1-thread-10] Initializing /data/samples/XING_B32.TGA: [testng] 02:47:40,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:47:40,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:47:40,238 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-26_02-47-40.log] [testng] 02:47:40,238 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53857774 - End of configuration. [testng] [2025-03-26 02:48:25,259] [pool-1-thread-9] Initializing /data/samples/MARBLES.TGA: [testng] 02:48:25,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:48:25,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:48:25,260 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-26_02-48-25.log] [testng] 02:48:25,260 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36985746 - End of configuration. [testng] [2025-03-26 02:49:21,525] [pool-1-thread-8] Initializing /data/samples/FLAG_T32.TGA: [testng] 02:49:21,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:49:21,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:21,527 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-26_02-49-21.log] [testng] 02:49:21,527 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e81467b - End of configuration. [testng] [2025-03-26 02:50:12,635] [pool-1-thread-7] Initializing /data/samples/UTC24.TGA: [testng] 02:50:12,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:50:12,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:12,636 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-26_02-50-12.log] [testng] 02:50:12,636 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b0b5870 - End of configuration. [testng] [2025-03-26 02:51:10,850] [pool-1-thread-6] Initializing /data/samples/CBW8.TGA: [testng] 02:51:10,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:51:10,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:51:10,851 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-26_02-51-10.log] [testng] 02:51:10,852 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3781a6f9 - End of configuration. [testng] [2025-03-26 02:51:50,928] [pool-1-thread-5] Initializing /data/samples/XING_T32.TGA: [testng] 02:51:50,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:51:50,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:51:50,929 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-26_02-51-50.log] [testng] 02:51:50,929 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a64d02e - End of configuration. [testng] [2025-03-26 02:52:43,037] [pool-1-thread-4] Initializing /data/samples/FLAG_B16.TGA: [testng] 02:52:43,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:52:43,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:43,039 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-26_02-52-43.log] [testng] 02:52:43,039 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5838e0a1 - End of configuration. [testng] [2025-03-26 02:53:26,372] [pool-1-thread-3] Initializing /data/samples/XING_B24.TGA: [testng] 02:53:26,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:53:26,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:53:26,373 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-26_02-53-26.log] [testng] 02:53:26,374 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64eae3ea - End of configuration. [testng] [2025-03-26 02:54:27,336] [pool-1-thread-2] Initializing /data/samples/XING_T16.TGA: [testng] 02:54:27,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:54:27,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:27,337 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-26_02-54-27.log] [testng] 02:54:27,337 |-INFO in ch.qos.logback.core.sift.SiftProcessor@650b9e3b - End of configuration. [testng] [2025-03-26 03:04:18,432] [pool-1-thread-7] Initializing /data/samples/CTC16.TGA: [testng] [2025-03-26 03:05:22,624] [pool-1-thread-8] Initializing /data/samples/UTC16.TGA: [testng] [2025-03-26 03:06:33,001] [pool-1-thread-4] Initializing /data/samples/CCM8.TGA: [testng] [2025-03-26 03:07:54,434] [pool-1-thread-12] Initializing /data/samples/FLAG_B24.TGA: [testng] [2025-03-26 03:09:13,627] [pool-1-thread-10] Initializing /data/samples/XING_B16.TGA: [testng] [2025-03-26 03:10:36,205] [pool-1-thread-5] Initializing /data/samples/UTC32.TGA: [testng] [2025-03-26 03:11:58,520] [pool-1-thread-2] Initializing /data/samples/FLAG_T16.TGA: [testng] [2025-03-26 03:13:09,389] [pool-1-thread-3] Initializing /data/samples/FLAG_B32.TGA: [testng] [2025-03-26 03:14:10,758] [pool-1-thread-11] Initializing /data/samples/XING_T24.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 56 minutes 53 seconds Finished: SUCCESS