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Started by upstream project "BIOFORMATS-test-repo" build number 391 originally caused by: Started by upstream project "Trigger" build number 415 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@18 [BIOFORMATS-test-folder@18] $ /bin/bash -xe /tmp/jenkins18043451473823930312.sh + '[' minc = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_61862_merge_ci -v /uod/idr/repos/curated/minc:/data -v /uod/idr-scratch/merge-ci/curated/minc:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 13:45:24,542 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 13:45:24,543 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 13:45:24,543 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 13:45:24,544 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 13:45:24,544 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 13:45:24,545 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 13:45:24,545 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 13:45:24,545 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 13:45:24,545 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 13:45:24,546 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 13:45:24,546 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 13:45:24,546 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 13:45:24,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 13:45:24,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 13:45:24,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 13:45:24,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 13:45:24,721 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 13:45:24,721 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 13:45:24,721 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 13:45:24,721 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 13:45:24,721 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 13:45:24,722 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 13:45:24,722 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 177 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-26 13:45:24,731] [main] java.version = 17.0.2 [testng] 13:45:24,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 13:45:24,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:45:24,772 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-26_13-45-24.log] [testng] 13:45:24,774 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-03-26 13:45:24,775] [main] testng.directory = /data [testng] [2025-03-26 13:45:24,776] [main] testng.configDirectory = /config [testng] [2025-03-26 13:45:24,784] [main] testng.multiplier = 1.0 [testng] [2025-03-26 13:45:24,785] [main] testng.in-memory = false [testng] [2025-03-26 13:45:24,785] [main] testng.allow-missing = false [testng] [2025-03-26 13:45:24,785] [main] user.language = en [testng] [2025-03-26 13:45:24,785] [main] user.country = ${user.country} [testng] [2025-03-26 13:45:24,785] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-26 13:45:25,997] [main] ---------------------------------------- [testng] [2025-03-26 13:45:25,997] [main] Total files: 15 [testng] [2025-03-26 13:45:25,997] [main] Scan time: 1.212 s (80 ms/file) [testng] [2025-03-26 13:45:25,997] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 15 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-26 13:50:36,933] [pool-1-thread-1] Initializing /data/samples/ICBM/icbm_template_zero.75mm.mnc: [testng] 13:50:36,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 13:50:36,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:50:36,936 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-26_13-50-36.log] [testng] 13:50:36,936 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d3f9f65 - End of configuration. [testng] [2025-03-26 13:50:54,404] [pool-1-thread-12] Initializing /data/samples/ICBM/icbm_template_2.00mm.mnc: [testng] 13:50:54,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 13:50:54,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:50:54,405 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-26_13-50-54.log] [testng] 13:50:54,406 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3abb6bae - End of configuration. [testng] [2025-03-26 13:51:13,053] [pool-1-thread-11] Initializing /data/qa-17215/IBSR01.mnc: [testng] 13:51:13,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 13:51:13,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:51:13,054 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-26_13-51-13.log] [testng] 13:51:13,054 |-INFO in ch.qos.logback.core.sift.SiftProcessor@338f4d1e - End of configuration. [testng] [2025-03-26 13:51:33,468] [pool-1-thread-10] Initializing /data/daren/test_32bit_float.mnc: [testng] 13:51:33,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 13:51:33,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:51:33,469 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-26_13-51-33.log] [testng] 13:51:33,469 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76c75075 - End of configuration. [testng] [2025-03-26 13:51:57,675] [pool-1-thread-9] Initializing /data/samples/ICBM/icbm_template_one.50mm.mnc: [testng] 13:51:57,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 13:51:57,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:51:57,676 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-26_13-51-57.log] [testng] 13:51:57,676 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12ee279b - End of configuration. [testng] [2025-03-26 13:52:22,085] [pool-1-thread-8] Initializing /data/samples/ICBM/icbm_template_3.00mm.mnc: [testng] 13:52:22,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 13:52:22,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:22,086 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-26_13-52-22.log] [testng] 13:52:22,086 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b947489 - End of configuration. [testng] [2025-03-26 13:52:42,818] [pool-1-thread-7] Initializing /data/bigbrain/full16_400um_2009b_sym.mnc: [testng] 13:52:42,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 13:52:42,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:42,819 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-26_13-52-42.log] [testng] 13:52:42,819 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a246cb2 - End of configuration. [testng] [2025-03-26 13:52:58,345] [pool-1-thread-6] Initializing /data/samples/ICBM/icbm_template_one.00mm.mnc: [testng] 13:52:58,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 13:52:58,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:58,347 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-26_13-52-58.log] [testng] 13:52:58,347 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63fa2e41 - End of configuration. [testng] [2025-03-26 13:53:17,955] [pool-1-thread-5] Initializing /data/samples/ICBM/icbm_template_6.00mm.mnc: [testng] 13:53:17,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 13:53:17,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:53:17,956 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-26_13-53-17.log] [testng] 13:53:17,957 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11571584 - End of configuration. [testng] [2025-03-26 13:53:39,112] [pool-1-thread-4] Initializing /data/bigbrain/pm6479o.mnc: [testng] 13:53:39,113 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 13:53:39,113 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:53:39,113 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-26_13-53-39.log] [testng] 13:53:39,114 |-INFO in ch.qos.logback.core.sift.SiftProcessor@374b02b3 - End of configuration. [testng] [2025-03-26 13:54:00,909] [pool-1-thread-3] Initializing /data/bigbrain/8-bit_full_400um_2009b_sym.mnc: [testng] 13:54:00,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 13:54:00,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:54:00,911 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-26_13-54-00.log] [testng] 13:54:00,911 |-INFO in ch.qos.logback.core.sift.SiftProcessor@773cac00 - End of configuration. [testng] [2025-03-26 13:54:17,630] [pool-1-thread-2] Initializing /data/samples/ICBM/icbm_template_zero.50mm.mnc: [testng] 13:54:17,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 13:54:17,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:54:17,632 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-26_13-54-17.log] [testng] 13:54:17,632 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74fe702c - End of configuration. BUILD SUCCESSFUL Total time: 16 minutes 11 seconds Finished: SUCCESS