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Started by upstream project "BIOFORMATS-test-repo" build number 392 originally caused by: Started by upstream project "Trigger" build number 416 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@19 [BIOFORMATS-test-folder@19] $ /bin/bash -xe /tmp/jenkins10828596424082303420.sh + '[' ultraview = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_61966_merge_ci -v /uod/idr/repos/curated/ultraview:/data -v /uod/idr-scratch/merge-ci/curated/ultraview:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 15:10:48,560 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 15:10:48,561 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - No custom configurators were discovered as a service. [testng] 15:10:48,561 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 15:10:48,562 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 15:10:48,563 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 15:10:48,563 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 15:10:48,563 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 15:10:48,563 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 15:10:48,564 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 15:10:48,564 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 15:10:48,564 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 15:10:48,565 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 15:10:48,721 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 15:10:48,721 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 15:10:48,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 15:10:48,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 15:10:48,751 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 15:10:48,751 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 15:10:48,751 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 15:10:48,751 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 15:10:48,751 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@4310d43 - End of configuration. [testng] 15:10:48,752 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1b11171f - Registering current configuration as safe fallback point [testng] 15:10:48,752 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 188 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-27 15:10:48,761] [main] java.version = 21 [testng] 15:10:48,764 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 15:10:48,764 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:10:48,805 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-27_15-10-48.log] [testng] 15:10:48,806 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69504ae9 - End of configuration. [testng] [2025-03-27 15:10:48,807] [main] testng.directory = /data [testng] [2025-03-27 15:10:48,807] [main] testng.configDirectory = /config [testng] [2025-03-27 15:10:48,816] [main] testng.multiplier = 1.0 [testng] [2025-03-27 15:10:48,816] [main] testng.in-memory = false [testng] [2025-03-27 15:10:48,816] [main] testng.allow-missing = false [testng] [2025-03-27 15:10:48,816] [main] user.language = en [testng] [2025-03-27 15:10:48,816] [main] user.country = ${user.country} [testng] [2025-03-27 15:10:48,817] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-27 15:14:25,737] [main] ---------------------------------------- [testng] [2025-03-27 15:14:25,737] [main] Total files: 19 [testng] [2025-03-27 15:14:25,738] [main] Scan time: 216.92 s (11416 ms/file) [testng] [2025-03-27 15:14:25,738] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-27 15:18:56,931] [pool-1-thread-1] Initializing /data/chad/UltraViewExamples/Works/CHAD200820080724121453.HTM: [testng] 15:18:56,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 15:18:56,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:18:56,933 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-27_15-18-56.log] [testng] 15:18:56,934 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31cd64dd - End of configuration. [testng] [2025-03-27 15:19:09,014] [pool-1-thread-12] Initializing /data/chad/DIC_IREN200820080107120042/IREN200820080107120042.HTM: [testng] 15:19:09,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 15:19:09,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:19:09,015 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-27_15-19-09.log] [testng] 15:19:09,015 |-INFO in ch.qos.logback.core.sift.SiftProcessor@698bbdc7 - End of configuration. [testng] [2025-03-27 15:19:21,335] [pool-1-thread-11] Initializing /data/kate/GreenRed6ZnoT/GreenRed5ZNoT.htm: [testng] 15:19:21,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 15:19:21,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:19:21,336 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-27_15-19-21.log] [testng] 15:19:21,337 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6436e93f - End of configuration. [testng] [2025-03-27 15:19:30,668] [pool-1-thread-10] Initializing /data/kate/GreenRedNoZ3T/GreenRedNoZ5T.htm: [testng] 15:19:30,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 15:19:30,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:19:30,669 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-27_15-19-30.log] [testng] 15:19:30,670 |-INFO in ch.qos.logback.core.sift.SiftProcessor@102794cf - End of configuration. [testng] [2025-03-27 15:19:39,702] [pool-1-thread-9] Initializing /data/helio/2 copy Cnn g-tubGFP 111221#20/2 copy Cnn g-tubGFP 111221#20.htm: [testng] 15:19:39,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 15:19:39,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:19:39,703 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-27_15-19-39.log] [testng] 15:19:39,703 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19555bfb - End of configuration. [testng] [2025-03-27 15:19:47,610] [pool-1-thread-8] Initializing /data/chad/UltraViewExample/doesNot/CHAD200920090331181253.HTM: [testng] 15:19:47,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 15:19:47,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:19:47,611 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-27_15-19-47.log] [testng] 15:19:47,612 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b2b50f8 - End of configuration. [testng] [2025-03-27 15:19:58,698] [pool-1-thread-7] Initializing /data/chad/UltraViewExamples/Bug/CHAD200820080724120123.HTM: [testng] 15:19:58,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 15:19:58,699 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:19:58,699 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-27_15-19-58.log] [testng] 15:19:58,700 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55d671a9 - End of configuration. [testng] [2025-03-27 15:20:11,516] [pool-1-thread-6] Initializing /data/chad/UltraViewExamples/DIC_200820080724115245/CHAD200820080724115245.HTM: [testng] 15:20:11,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 15:20:11,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:20:11,517 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-27_15-20-11.log] [testng] 15:20:11,518 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1707d80 - End of configuration. [testng] [2025-03-27 15:20:32,987] [pool-1-thread-5] Initializing /data/kate/Neutrophils#18/tiffs/Neutrophils#18.htm: [testng] 15:20:32,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 15:20:32,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:20:32,988 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-27_15-20-32.log] [testng] 15:20:32,988 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66aae360 - End of configuration. [testng] [2025-03-27 15:20:46,088] [pool-1-thread-4] Initializing /data/chad/UltraViewSamples/series 3/RAJE200820080619090142.HTM: [testng] 15:20:46,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 15:20:46,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:20:46,089 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-27_15-20-46.log] [testng] 15:20:46,089 |-INFO in ch.qos.logback.core.sift.SiftProcessor@527d16d8 - End of configuration. [testng] [2025-03-27 15:20:57,598] [pool-1-thread-3] Initializing /data/kate/GreenRedNoZnoT/GreenRedNoZNoT.htm: [testng] 15:20:57,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 15:20:57,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:20:57,598 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-27_15-20-57.log] [testng] 15:20:57,599 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48f61b3 - End of configuration. [testng] [2025-03-27 15:21:11,064] [pool-1-thread-2] Initializing /data/kate/GreenOnlyNoZnoT/GreenOnlyNoZnoT.htm: [testng] 15:21:11,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 15:21:11,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:21:11,065 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-27_15-21-11.log] [testng] 15:21:11,066 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30e384ad - End of configuration. [testng] [2025-03-27 15:27:09,576] [pool-1-thread-6] Initializing /data/todd/movement-1.htm: [testng] [2025-03-27 15:27:20,402] [pool-1-thread-12] Initializing /data/chad/UltraViewExample/works/CHAD200920090331181355.HTM: [testng] [2025-03-27 15:29:35,251] [pool-1-thread-2] Initializing /data/chad/20080107130850/IREN200820080107130850.HTM: [testng] [2025-03-27 15:30:39,994] [pool-1-thread-3] Initializing /data/kate/GreenRed6Z3T/GreenRed5Z5T.htm: [testng] [2025-03-27 15:33:49,646] [pool-1-thread-10] Initializing /data/chad/DIC/EZRA200820080626102637.HTM: [testng] [2025-03-27 15:34:48,190] [pool-1-thread-6] Initializing /data/kate/Neutrophils#18/Neutrophils#18.htm: Build was aborted Calling Pipeline was cancelled Finished: ABORTED